Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 0.0e+00 1190.3 611 100.0
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.2e-305 1050.4 545 99.3
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 8.6e-300 1033.1 545 96.1
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.4e-270 936.0 610 79.7
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.9e-260 901.4 577 80.9
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 9.7e-259 896.7 610 79.5
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 8.5e-255 883.6 610 78.4
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.9e-251 872.5 579 78.9
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 1.1e-246 856.7 609 74.9
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 1.6e-232 809.7 564 78.2
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 4.7e-221 771.5 615 68.1
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 8.8e-220 767.3 626 67.7
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 1.1e-217 760.4 610 66.7
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.7e-215 753.1 629 67.7
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 2.5e-214 749.2 623 64.2
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 4.9e-210 734.9 615 65.7
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.8e-209 733.0 630 64.8
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 4.1e-209 731.9 658 64.0
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 1.2e-208 730.3 629 66.1
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 5.6e-206 721.5 622 64.5
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 9.5e-206 720.7 624 62.7
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 8.0e-205 717.6 613 63.6
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 1.4e-204 716.8 483 74.3
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.0e-204 715.3 624 62.0
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 5.2e-204 714.9 618 64.9
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.4e-203 711.8 622 62.1
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.2e-202 709.5 655 59.1
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 2.9e-202 709.1 616 63.8
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.9e-202 709.1 636 62.3
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 6.4e-202 708.0 547 69.5
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 6.4e-202 708.0 636 61.3
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 6.4e-202 708.0 631 61.6
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 2.3e-199 699.5 649 59.2
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 3.3e-198 695.7 656 58.7
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 2.1e-197 693.0 628 60.0
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 1.1e-196 690.6 531 68.0
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 1.4e-196 690.3 652 59.8
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 8.9e-196 687.6 614 63.2
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 3.4e-195 685.6 634 60.1
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 2.2e-194 682.9 693 57.9
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.2e-194 682.9 483 71.4
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 1.4e-193 680.2 652 60.3
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.4e-193 679.5 644 60.7
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.4e-193 678.3 544 65.6
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 1.6e-192 676.8 633 61.3
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 2.1e-192 676.4 632 58.5
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 6.0e-192 674.9 623 60.8
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 6.6e-191 671.4 447 76.1
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 1.1e-190 670.6 630 60.5
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 3.3e-190 669.1 640 62.0
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 4.3e-190 668.7 655 59.2
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 4.3e-190 668.7 611 60.6
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 7.3e-190 667.9 486 71.2
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 1.2e-189 667.2 618 60.5
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 2.1e-189 666.4 624 60.9
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 2.8e-189 666.0 483 68.7
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 6.2e-189 664.8 624 60.3
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 6.2e-189 664.8 625 60.0
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 6.2e-189 664.8 647 60.0
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.4e-188 663.7 630 61.6
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 3.4e-187 659.1 392 82.7
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 4.4e-187 658.7 637 59.2
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.2e-186 656.4 642 59.5
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.9e-185 653.3 402 80.3
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 1.6e-184 650.2 606 60.2
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 6.0e-184 648.3 644 59.8
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 1.4e-180 637.1 635 58.1
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 6.8e-180 634.8 626 57.8
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 9.9e-179 630.9 579 63.7
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 3.8e-178 629.0 610 59.3
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 1.9e-177 626.7 637 56.4
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 5.4e-177 625.2 625 56.0
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 5.1e-175 618.6 479 66.8
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 5.8e-171 605.1 618 54.4
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 1.3e-170 604.0 662 53.9
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 4.9e-170 602.1 485 65.8
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 9.3e-169 597.8 417 71.2
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 1.0e-167 594.3 667 53.7
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 1.5e-163 580.5 481 62.2
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 1.5e-163 580.5 651 52.1
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 1.0e-159 567.8 439 63.8
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 1.8e-159 567.0 613 55.1
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.5e-158 563.9 424 65.8
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 9.0e-156 554.7 473 62.2
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.9e-153 547.0 609 54.5
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 5.1e-151 538.9 619 53.8
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 8.7e-151 538.1 627 53.1
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 4.3e-150 535.8 584 55.3
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 4.9e-146 522.3 467 60.6
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 1.6e-144 517.3 496 56.7
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 4.3e-142 509.2 360 70.0
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 6.5e-138 495.4 435 59.5
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 2.5e-137 493.4 483 57.1
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 3.7e-133 479.6 441 59.2
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-131 473.8 488 54.7
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 2.2e-130 470.3 417 60.7
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 7.2e-129 465.3 554 47.3
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 7.9e-128 461.8 432 53.5
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 3.0e-127 459.9 581 48.4
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 2.4e-124 450.3 590 49.3
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 7.0e-124 448.7 288 76.7
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 3.3e-118 429.9 763 40.5
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 5.3e-116 422.5 354 62.7
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 2.7e-112 410.2 468 52.8
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.4e-108 397.9 547 49.7
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.7e-104 382.9 491 49.3
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 9.1e-100 368.6 264 70.1
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.9e-97 360.9 411 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 7.5e-94 349.0 342 53.2
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.3e-87 327.4 496 40.3
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 2.9e-85 320.5 194 82.0
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 3.0e-82 310.5 306 57.2
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 2.5e-81 307.4 426 48.1
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 4.3e-81 306.6 266 58.3
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 7.3e-81 305.8 411 48.7
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 1.2e-78 298.5 635 38.1
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 4.4e-78 296.6 411 48.2
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 5.6e-73 279.6 164 81.7
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 8.9e-71 272.3 164 80.5
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 2.0e-70 271.2 560 38.9
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 9.2e-68 262.3 345 43.8
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 1.3e-66 258.5 164 73.8
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 2.1e-64 251.1 162 74.7
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 3.6e-64 250.4 214 65.4
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 7.8e-59 232.6 338 46.4
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 1.6e-56 224.9 167 64.7
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.4e-55 221.1 126 84.1
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 2.9e-53 214.2 120 83.3
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 2.0e-46 191.4 415 32.5
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.7e-45 188.3 337 41.2
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.8e-45 187.2 126 73.8
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 4.9e-45 186.8 140 69.3
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.9e-44 184.9 385 33.0
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 4.2e-44 183.7 184 57.6
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.3e-42 178.7 193 55.4
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 4.0e-39 167.2 130 69.2
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 7.6e-38 162.9 119 70.6
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 2.5e-33 147.9 165 51.5
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 3.7e-32 144.1 239 41.4
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 3.7e-32 144.1 239 41.4
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 3.7e-32 144.1 313 29.4
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 1.8e-31 141.7 176 45.5
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 1.3e-29 135.6 87 75.9
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 4.8e-24 117.1 65 83.1
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 8.2e-24 116.3 90 64.4
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 2.4e-23 114.8 248 32.7
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 5.3e-23 113.6 141 47.5
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 3.8e-21 107.5 68 79.4
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.4e-20 105.5 82 68.3
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.7e-19 101.3 92 56.5
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.7e-19 101.3 92 56.5
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.7e-19 101.3 92 56.5
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 2.7e-19 101.3 92 56.5
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 1.0e-18 99.4 65 67.7
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 1.8e-18 98.6 176 39.8
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.3e-18 98.2 85 58.8
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 3.0e-18 97.8 83 60.2
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 5.1e-18 97.1 54 85.2
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 2.2e-16 91.7 126 46.0
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 1.2e-14 85.9 61 65.6
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.9e-13 81.3 147 37.4
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.0e-13 80.5 163 41.1
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 7.2e-12 76.6 74 52.7
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 7.2e-12 76.6 51 78.4
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 6.1e-11 73.6 52 73.1
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 2.3e-10 71.6 52 71.2
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 2.0e-09 68.6 46 58.7
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 2.0e-09 68.6 46 58.7
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 3.3e-09 67.8 39 79.5
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 5.7e-09 67.0 46 56.5
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 7.4e-09 66.6 81 43.2
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 1.3e-08 65.9 46 71.7
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 2.2e-08 65.1 36 77.8
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 3.1e-07 61.2 40 75.0


User provided reference genes

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