Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G092200 Gossypium raimondii HOM05D002254 ORTHO05D005423 6.0e-14 79.7 43 100.0
QL06p029474 Quercus lobata HOM05D002254 ORTHO05D005423 3.0e-13 77.4 42 95.2
ECA246G3091 Erigeron canadensis HOM05D002254 ORTHO05D005423 3.9e-13 77.0 42 92.9
Ah.01g009370 Amaranthus hybridus HOM05D002254 ORTHO05D005423 5.1e-13 76.6 42 95.2
AUR62010099 Chenopodium quinoa HOM05D002254 ORTHO05D005423 6.6e-13 76.3 42 92.9
AUR62013095 Chenopodium quinoa HOM05D002254 ORTHO05D005423 6.6e-13 76.3 42 92.9
Lsat_1_v5_gn_3_37780 Lactuca sativa HOM05D002254 ORTHO05D005423 6.6e-13 76.3 42 90.5
Actinidia06650 Actinidia chinensis HOM05D002254 ORTHO05D005423 1.1e-12 75.5 42 90.5
HanXRQChr05g0152951 Helianthus annuus HOM05D002254 ORTHO05D005423 1.1e-12 75.5 42 90.5
vmacro14290 Vaccinium macrocarpon HOM05D002254 ORTHO05D005423 1.1e-12 75.5 42 90.5
Atru.chr4.828 Acer truncatum HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
EL10Ac9g21444 Beta vulgaris HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Cpa.g.sc42.118 Carica papaya HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Cfa002830 Carpinus fangiana HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Dinv24771 Davidia involucrata HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Dinv30096 Davidia involucrata HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Duzib264G0949 Durio zibethinus HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Gohir.A01G176800 Gossypium hirsutum HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Gohir.D01G167600 Gossypium hirsutum HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Gorai.002G208300 Gossypium raimondii HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Hma1.2p1_0183F.1_g080930 Hydrangea macrophylla HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Prupe.6G158000 Prunus persica HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
Thecc.01G127100 Theobroma cacao HOM05D002254 ORTHO05D005423 1.5e-12 75.1 42 92.9
MSTRG.2664 Avicennia marina HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Ciclev10026667m.g Citrus clementina HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Cc07_g18050 Coffea canephora HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
DCAR_001358 Daucus carota HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Migut.H00743 Erythranthe guttata HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
HanXRQChr08g0236341 Helianthus annuus HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Nitab4.5_0000250g0020 Nicotiana tabacum HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Nitab4.5_0004141g0030 Nicotiana tabacum HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Oeu037798.1 Olea europaea HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Potri.007G107100 Populus trichocarpa HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Sc06g0001400 Simmondsia chinensis HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Solyc08g067950.3 Solanum lycopersicum HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
Sopen08g021870 Solanum pennellii HOM05D002254 ORTHO05D005423 1.9e-12 74.7 42 90.5
FAN16G3547 Fragaria x ananassa HOM05D002254 ORTHO05D005423 2.5e-12 74.3 42 90.5
FAN21G0823 Fragaria x ananassa HOM05D002254 ORTHO05D005423 2.5e-12 74.3 42 90.5
RcHm_v2.0_Chr5g0024011 Rosa chinensis HOM05D002254 ORTHO05D005423 2.5e-12 74.3 42 90.5
Aa31LG1G17310 Aethionema arabicum HOM05D002254 ORTHO05D005423 3.3e-12 73.9 42 90.5
ATR0681G323 Amborella trichopoda HOM05D002254 ORTHO05D005423 3.3e-12 73.9 42 90.5
COL.COLO4_14017 Corchorus olitorius HOM05D002254 ORTHO05D005423 3.3e-12 73.9 42 90.5
MD01G1012100 Malus domestica HOM05D002254 ORTHO05D005423 3.3e-12 73.9 42 90.5
MD15G1337900 Malus domestica HOM05D002254 ORTHO05D005423 3.3e-12 73.9 42 90.5
THA.LOC104799480 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 3.3e-12 73.9 42 90.5
Potri.005G061700 Populus trichocarpa HOM05D002254 ORTHO05D005423 4.3e-12 73.6 42 88.1
Hund06402 Selenicereus undatus HOM05D002254 ORTHO05D005423 4.3e-12 73.6 42 88.1
PGSC0003DMG400014486 Solanum tuberosum HOM05D002254 ORTHO05D005423 4.3e-12 73.6 42 88.1
CiPaw.03G128400 Carya illinoinensis HOM05D002254 ORTHO05D005423 5.6e-12 73.2 42 90.5
FvH4_3g14560 Fragaria vesca HOM05D002254 ORTHO05D005423 5.6e-12 73.2 42 88.1
FAN11G0976 Fragaria x ananassa HOM05D002254 ORTHO05D005423 5.6e-12 73.2 42 88.1
Duzib147G0903 Durio zibethinus HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 88.1
Glyma.04G214500 Glycine max HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
Glyma.06G151700 Glycine max HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
Lj1g0024859 Lotus japonicus HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
MBI10_g06742_MAGBIO Magnolia biondii HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
Manes.12G153000 Manihot esculenta HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
Nn5g28635 Nelumbo nucifera HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
Phvul.009G148700 Phaseolus vulgaris HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
TWI31G0091 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
TWI75G1050 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
VMungo0647G1804 Vigna mungo HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
GSVIVG01026526001 Vitis vinifera HOM05D002254 ORTHO05D005423 7.3e-12 72.8 42 90.5
CANSAT01G2903 Cannabis sativa HOM05D002254 ORTHO05D005423 9.5e-12 72.4 42 88.1
Psat5g056880 Pisum sativum HOM05D002254 ORTHO05D005423 9.5e-12 72.4 42 88.1
PGR102G3355 Punica granatum HOM05D002254 ORTHO05D005423 9.5e-12 72.4 42 88.1
PGR142G4456 Punica granatum HOM05D002254 ORTHO05D005423 9.5e-12 72.4 42 88.1
Sabra07G0087600 Salix brachista HOM05D002254 ORTHO05D005423 9.5e-12 72.4 42 85.7
arahy.Tifrunner.gnm1.ann1.2KW32D Arachis hypogaea HOM05D002254 ORTHO05D005423 1.2e-11 72.0 42 85.7
arahy.Tifrunner.gnm1.ann1.FM41R7 Arachis hypogaea HOM05D002254 ORTHO05D005423 1.2e-11 72.0 42 85.7
arahy.Tifrunner.gnm1.ann1.N1TEIX Arachis hypogaea HOM05D002254 ORTHO05D005423 1.2e-11 72.0 42 85.7
Sed0005738 Sechium edule HOM05D002254 ORTHO05D005423 1.2e-11 72.0 42 88.1
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 1.2e-11 72.0 42 88.1
THA.LOC104818462 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 1.2e-11 72.0 42 88.1
Medtr8g103900 Medicago truncatula HOM05D002254 ORTHO05D005423 2.1e-11 71.2 42 83.3
CSS0030870 Camellia sinensis var. sinensis HOM05D002254 ORTHO05D005423 2.8e-11 70.9 39 92.3
MELO3C008044.2 Cucumis melo HOM05D002254 ORTHO05D005423 2.8e-11 70.9 42 85.7
CsaV3_6G041770 Cucumis sativus L. HOM05D002254 ORTHO05D005423 2.8e-11 70.9 42 85.7
Eucgr.H04941 Eucalyptus grandis HOM05D002254 ORTHO05D005423 2.8e-11 70.9 42 85.7
Lalb_Chr08g0238481 Lupinus albus HOM05D002254 ORTHO05D005423 2.8e-11 70.9 42 85.7
PSO541G1616 Papaver somniferum HOM05D002254 ORTHO05D005423 2.8e-11 70.9 39 92.3
unitig_8.g4580 Utricularia gibba HOM05D002254 ORTHO05D005423 2.8e-11 70.9 42 83.3
HPP92_013266 Vanilla planifolia HOM05D002254 ORTHO05D005423 2.8e-11 70.9 42 85.7
HPP92_013271 Vanilla planifolia HOM05D002254 ORTHO05D005423 2.8e-11 70.9 42 85.7
Aqoxy5G00323 Aquilegia oxysepala HOM05D002254 ORTHO05D005423 3.6e-11 70.5 39 89.7
AL8G42060 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 3.6e-11 70.5 42 85.7
PSO675G8066 Papaver somniferum HOM05D002254 ORTHO05D005423 3.6e-11 70.5 39 89.7
Medtr3g095900 Medicago truncatula HOM05D002254 ORTHO05D005423 4.7e-11 70.1 42 83.3
Ca_16929_v3 Cicer arietinum L. HOM05D002254 ORTHO05D005423 8.1e-11 69.3 42 83.3
AL6G20170 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 1.1e-10 68.9 42 83.3
AT5G09770 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 1.1e-10 68.9 42 83.3
Carub.0006s0818 Capsella rubella HOM05D002254 ORTHO05D005423 1.1e-10 68.9 42 83.3
Carub.0008s2544 Capsella rubella HOM05D002254 ORTHO05D005423 1.1e-10 68.9 42 83.3
ClCG01G015530 Citrullus lanatus HOM05D002254 ORTHO05D005423 1.1e-10 68.9 42 85.7
TPR.G34646 Trifolium pratense HOM05D002254 ORTHO05D005423 1.1e-10 68.9 42 83.3
TAR381G1435 Trochodendron aralioides HOM05D002254 ORTHO05D005423 1.4e-10 68.6 42 83.3
Sp2g27710 Schrenkiella parvula HOM05D002254 ORTHO05D005423 1.8e-10 68.2 42 83.3
Sp6g33620 Schrenkiella parvula HOM05D002254 ORTHO05D005423 1.8e-10 68.2 42 83.3
BcaB04g19981 Brassica carinata HOM05D002254 ORTHO05D005423 2.3e-10 67.8 42 83.3
A09p08760 Brassica napus HOM05D002254 ORTHO05D005423 2.3e-10 67.8 42 83.3
BraA09t36526Z Brassica rapa HOM05D002254 ORTHO05D005423 2.3e-10 67.8 42 83.3
AT5G64650 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 3.1e-10 67.4 42 81.0
BcaC04g23302 Brassica carinata HOM05D002254 ORTHO05D005423 3.1e-10 67.4 42 81.0
C09p09930 Brassica napus HOM05D002254 ORTHO05D005423 3.1e-10 67.4 42 81.0
BolC9t53900H Brassica oleracea HOM05D002254 ORTHO05D005423 3.1e-10 67.4 42 81.0
DCAR_005761 Daucus carota HOM05D002254 ORTHO05D005423 3.1e-10 67.4 40 87.5
SEGI_31183 Sequoiadendron giganteum HOM05D002254 ORTHO05D005423 5.2e-10 66.6 38 86.8
arahy.Tifrunner.gnm1.ann1.FNHU3U Arachis hypogaea HOM05D002254 ORTHO05D005423 6.8e-10 66.2 41 78.0
Oeu000401.1 Olea europaea HOM05D002254 ORTHO05D005423 6.8e-10 66.2 37 89.2
Oeu038989.2 Olea europaea HOM05D002254 ORTHO05D005423 6.8e-10 66.2 37 89.2
Os01g0839300 Oryza sativa ssp. japonica HOM05D002254 ORTHO05D005423 8.9e-10 65.9 42 83.3
Os05g0460700 Oryza sativa ssp. japonica HOM05D002254 ORTHO05D005423 8.9e-10 65.9 42 83.3
CARHR278620 Cardamine hirsuta HOM05D002254 ORTHO05D005423 1.5e-09 65.1 42 78.6
BcaB01g05562 Brassica carinata HOM05D002254 ORTHO05D005423 5.8e-09 63.2 42 76.2
BcaB01g05660 Brassica carinata HOM05D002254 ORTHO05D005423 5.8e-09 63.2 42 76.2
A03p04230 Brassica napus HOM05D002254 ORTHO05D005423 5.8e-09 63.2 42 76.2
C03p04680 Brassica napus HOM05D002254 ORTHO05D005423 5.8e-09 63.2 42 76.2
BraA03t09768Z Brassica rapa HOM05D002254 ORTHO05D005423 5.8e-09 63.2 42 76.2
Thhalv10014895m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 5.8e-09 63.2 42 76.2
CSS0017576 Camellia sinensis var. sinensis HOM05D002254 ORTHO05D005423 7.6e-09 62.8 36 86.1
BolC3t13002H Brassica oleracea HOM05D002254 ORTHO05D005423 9.9e-09 62.4 42 76.2
BolC3t13004H Brassica oleracea HOM05D002254 ORTHO05D005423 9.9e-09 62.4 42 76.2
Zm00001eb368030 Zea mays HOM05D002254 ORTHO05D005423 2.2e-08 61.2 42 78.6
CBR_g41367 Chara braunii HOM05D002254 ORTHO05D005423 3.2e-07 57.4 38 76.3
AagrBONN_evm.TU.Sc2ySwM_344.4427 Anthoceros agrestis HOM05D002254 ORTHO05D005423 4.1e-07 57.0 39 69.2
Thhalv10005089m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 4.1e-07 57.0 37 78.4
Pp3c16_7040 Physcomitrium patens HOM05D002254 ORTHO05D005423 6.0e-06 53.1 39 66.7
RcHm_v2.0_Chr1g0322321 Rosa chinensis HOM05D002359 ORTHO05D002394 6.0e-06 53.1 37 78.4
RcHm_v2.0_Chr4g0419681 Rosa chinensis HOM05D002359 ORTHO05D002394 7.8e-06 52.8 37 78.4


User provided reference genes

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