Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 2.2e-277 958.4 488 100.0
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 2.2e-277 958.4 488 100.0
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 4.2e-257 891.0 488 93.6
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 2.5e-241 838.6 488 84.4
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 2.9e-237 825.1 488 84.6
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 3.0e-194 682.2 492 72.2
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.3e-193 678.7 488 67.6
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 3.3e-193 678.7 445 74.8
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.3e-192 676.8 488 67.6
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 2.8e-192 675.6 488 69.1
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.8e-192 675.6 488 67.4
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 2.8e-192 675.6 488 67.2
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.2e-190 670.2 496 66.5
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.5e-190 668.3 496 66.3
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.3e-189 666.8 465 71.2
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 6.4e-189 664.5 496 65.5
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 2.7e-187 659.1 488 68.6
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 2.7e-187 659.1 488 68.6
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.3e-186 656.8 488 65.8
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 3.9e-186 655.2 528 65.7
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 1.5e-185 653.3 488 69.3
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.1e-184 649.4 488 68.9
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 4.8e-184 648.3 419 76.1
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 2.4e-183 646.0 490 66.1
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 5.3e-183 644.8 486 67.3
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 5.3e-183 644.8 485 67.4
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 6.9e-183 644.4 488 65.6
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.0e-182 642.9 488 66.8
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 2.6e-182 642.5 490 67.6
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 9.3e-180 634.0 488 67.0
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 2.3e-178 629.4 415 74.9
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 2.3e-178 629.4 490 65.7
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.1e-177 627.1 450 70.4
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 1.9e-177 626.3 409 75.3
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 5.7e-177 624.8 489 65.4
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 9.6e-177 624.0 405 75.6
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 1.6e-176 623.2 405 75.1
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 2.8e-176 622.5 426 71.6
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 2.8e-176 622.5 485 65.6
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 3.7e-176 622.1 379 78.4
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 4.8e-176 621.7 405 75.1
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 6.3e-176 621.3 378 75.9
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 8.2e-176 620.9 377 78.2
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.4e-175 619.4 460 67.6
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 4.1e-175 618.6 368 79.6
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 1.2e-174 617.1 493 64.5
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 2.0e-174 616.3 447 68.5
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 2.6e-174 615.9 380 77.9
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 1.7e-173 613.2 493 65.9
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.9e-172 609.8 494 65.0
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.2e-172 609.0 377 75.3
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 5.5e-172 608.2 466 66.3
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 9.3e-172 607.4 488 63.5
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.2e-171 607.1 386 79.5
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 2.1e-171 606.3 414 71.5
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 3.5e-171 605.5 460 65.9
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 3.5e-171 605.5 493 65.1
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 4.6e-171 605.1 491 65.2
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 4.6e-171 605.1 494 63.6
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 7.9e-171 604.4 494 63.4
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.3e-170 602.8 484 62.6
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 2.3e-170 602.8 414 71.0
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.9e-170 602.1 465 65.2
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.5e-169 600.1 451 66.7
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 3.3e-169 599.0 501 62.9
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 5.7e-169 598.2 501 62.9
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 1.6e-168 596.7 380 76.1
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.2e-168 596.3 456 66.9
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.2e-168 596.3 501 62.3
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 3.1e-167 592.4 452 65.0
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 6.9e-167 591.3 410 72.0
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 5.0e-165 585.1 488 63.5
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 6.5e-165 584.7 470 63.4
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 3.2e-164 582.4 440 66.8
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 3.2e-164 582.4 397 73.0
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 4.2e-164 582.0 405 71.9
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 4.2e-164 582.0 478 62.1
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 9.4e-164 580.9 486 63.0
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 9.4e-164 580.9 463 63.1
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 4.6e-163 578.6 488 61.7
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.8e-162 576.6 445 65.6
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 6.7e-162 574.7 502 60.6
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 2.0e-161 573.2 395 71.9
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 2.5e-161 572.8 470 65.3
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.5e-158 563.5 358 76.0
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 9.4e-156 554.3 378 70.9
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.2e-155 553.9 382 69.4
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.6e-155 553.5 320 78.8
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 1.4e-154 550.4 490 61.8
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 2.3e-154 549.7 385 69.4
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 1.7e-152 543.5 577 52.3
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.2e-150 537.3 384 72.1
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 1.2e-150 537.3 458 61.1
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 2.6e-150 536.2 467 61.9
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 4.4e-145 518.8 269 89.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 5.7e-145 518.5 484 59.3
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.7e-144 516.9 456 61.0
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.2e-144 516.5 370 67.3
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.4e-143 513.8 456 61.0
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 4.2e-140 502.3 371 65.2
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 7.2e-132 474.9 335 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 9.5e-132 474.6 376 64.4
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.5e-126 456.1 465 52.7
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 4.3e-124 449.1 357 60.2
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.1e-111 407.9 289 67.8
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.1e-111 407.9 279 65.6
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 6.8e-106 388.7 316 63.9
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 9.2e-103 378.3 244 73.0
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 1.3e-96 357.8 376 55.1
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 2.5e-92 343.6 239 70.3
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.8e-80 303.1 233 61.8
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.0e-74 283.1 204 61.3
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.6e-73 280.4 204 59.8
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-72 278.1 204 58.8
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-72 278.1 204 60.8
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 1.9e-71 274.2 316 44.3
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 5.1e-69 266.2 272 48.5
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.6e-51 208.0 210 50.0
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 3.6e-38 163.7 141 64.5
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.1e-34 150.2 98 64.3
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 1.0e-21 109.0 162 42.6
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 6.5e-16 89.7 97 55.7
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 8.0e-14 82.8 274 25.5
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 6.8e-13 79.7 345 24.1
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.5e-12 78.6 285 24.2
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 9.8e-12 75.9 295 21.0
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 9.8e-12 75.9 295 21.0
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.7e-11 75.1 269 21.9
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 2.2e-11 74.7 276 24.3
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.2e-11 74.7 269 21.9
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 2.2e-11 74.7 271 24.7
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 2.8e-11 74.3 327 24.8
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.7e-11 73.9 270 22.2
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 4.9e-11 73.6 88 51.1
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 4.9e-11 73.6 276 22.8
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 8.3e-11 72.8 314 23.2
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.4e-10 72.0 348 22.4
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 1.8e-10 71.6 295 21.0
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 9.2e-10 69.3 234 23.1
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 9.2e-10 69.3 275 23.6
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 2.3e-08 64.7 292 24.0
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 3.8e-08 63.9 317 21.8
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 5.0e-08 63.5 238 21.8
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 8.6e-08 62.8 316 20.6
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.1e-07 62.4 376 21.3


User provided reference genes

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