Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 8.6e-154 547.0 280 100.0
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 5.2e-151 537.7 280 98.6
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.1e-148 530.0 280 98.2
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 4.9e-133 478.0 282 87.9
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 5.3e-127 458.0 280 86.4
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 2.1e-107 392.9 232 84.9
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.9e-106 388.7 288 73.6
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 3.9e-106 388.7 280 74.6
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 8.7e-106 387.5 283 73.9
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.1e-105 387.1 222 88.3
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 3.3e-105 385.6 282 73.0
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 3.3e-105 385.6 287 74.2
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 5.7e-105 384.8 281 73.0
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 7.4e-105 384.4 277 74.4
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 2.8e-104 382.5 265 77.0
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 2.8e-104 382.5 261 77.4
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 3.7e-104 382.1 222 87.4
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.7e-104 382.1 280 72.5
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 8.2e-104 380.9 270 74.4
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 2.4e-103 379.4 267 76.4
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.4e-103 379.4 287 71.4
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 5.3e-103 378.3 284 72.2
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 5.3e-103 378.3 286 72.4
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 6.9e-103 377.9 228 83.8
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.2e-102 377.1 284 73.9
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.2e-102 377.1 274 73.7
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 2.0e-102 376.3 285 71.6
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 4.5e-102 375.2 236 82.6
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.3e-101 373.6 284 71.8
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.7e-101 373.2 234 81.6
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.7e-101 373.2 283 72.8
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 1.7e-101 373.2 280 71.8
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 2.9e-101 372.5 216 87.0
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 4.9e-101 371.7 275 73.8
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 4.9e-101 371.7 280 71.4
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 4.9e-101 371.7 285 71.9
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 4.9e-101 371.7 281 71.9
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 8.4e-101 370.9 282 71.6
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 8.4e-101 370.9 235 82.1
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 8.4e-101 370.9 280 71.4
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 8.4e-101 370.9 267 73.0
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.1e-100 370.5 288 72.9
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.1e-100 370.5 275 72.0
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.1e-100 370.5 204 90.2
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.4e-100 370.2 252 76.6
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.4e-100 370.2 268 75.0
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.4e-100 370.2 221 82.8
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.4e-100 370.2 289 72.7
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 2.5e-100 369.4 230 80.4
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 2.5e-100 369.4 230 80.4
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.5e-100 369.4 244 78.3
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.5e-100 369.4 289 71.3
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.5e-100 369.4 279 71.0
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 4.2e-100 368.6 287 71.1
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.2e-100 368.6 281 70.8
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 5.5e-100 368.2 280 70.7
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 5.5e-100 368.2 281 71.9
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 7.1e-100 367.9 227 81.9
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 9.3e-100 367.5 234 81.2
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 9.3e-100 367.5 284 71.5
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 9.3e-100 367.5 281 71.5
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.2e-99 367.1 207 87.9
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.2e-99 367.1 287 71.4
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.2e-99 367.1 284 70.8
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 1.6e-99 366.7 277 70.8
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 1.6e-99 366.7 280 71.1
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 2.1e-99 366.3 238 79.0
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.1e-99 366.3 282 71.3
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.7e-99 365.9 235 79.6
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 3.5e-99 365.5 272 70.2
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 4.6e-99 365.2 204 87.7
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 6.1e-99 364.8 261 72.8
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 6.1e-99 364.8 219 84.0
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.0e-98 364.0 271 74.2
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 1.3e-98 363.6 283 71.0
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.3e-98 362.8 275 72.4
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.3e-98 362.8 281 70.5
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 3.9e-98 362.1 281 70.8
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 3.9e-98 362.1 228 81.1
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 5.1e-98 361.7 265 72.8
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 6.7e-98 361.3 281 70.8
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 8.7e-98 360.9 280 69.3
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.1e-97 360.5 282 70.6
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 3.3e-97 359.0 260 73.1
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.3e-97 359.0 278 71.6
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 5.7e-97 358.2 261 71.3
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 5.7e-97 358.2 221 81.9
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 7.4e-97 357.8 220 80.9
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 9.7e-97 357.5 284 69.7
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 2.2e-96 356.3 275 71.6
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 3.7e-96 355.5 287 69.0
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 4.8e-96 355.1 203 85.7
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.8e-96 355.1 301 65.1
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.1e-95 354.0 267 70.0
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.4e-95 353.6 270 70.7
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.4e-95 353.6 269 69.5
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.4e-95 353.6 274 71.9
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.8e-95 353.2 220 79.5
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.8e-95 353.2 269 71.4
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.8e-95 353.2 213 84.5
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 4.1e-95 352.1 223 80.7
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 4.1e-95 352.1 228 78.5
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 5.3e-95 351.7 269 69.5
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 9.0e-95 350.9 280 70.0
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.0e-95 350.9 267 69.7
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.2e-94 350.5 296 67.2
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.2e-94 350.5 284 67.6
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.5e-94 350.1 228 78.1
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.3e-93 347.1 272 70.2
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.4e-92 343.6 210 82.9
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 3.2e-92 342.4 274 69.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 2.1e-91 339.7 198 83.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.6e-91 338.6 325 59.7
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.0e-90 335.9 276 68.1
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 9.7e-89 330.9 198 81.8
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 6.3e-88 328.2 272 66.5
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.4e-87 327.0 259 69.1
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 3.8e-85 318.9 196 80.1
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 6.5e-85 318.2 166 92.2
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.1e-83 313.2 310 60.0
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.1e-83 313.2 198 79.3
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 3.6e-83 312.4 294 65.6
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 5.1e-82 308.5 166 92.2
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.6e-81 306.2 325 57.5
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 4.4e-81 305.4 272 64.3
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.5e-78 297.0 209 72.2
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-77 294.3 244 65.6
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 3.8e-77 292.4 236 65.7
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.5e-76 289.7 306 57.5
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.2e-76 289.3 292 59.9
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.6e-75 287.0 154 89.6
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 3.0e-74 282.7 235 65.1
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.0e-73 280.0 286 59.1
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.0e-73 280.0 213 69.0
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 3.3e-73 279.3 239 66.9
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.7e-72 276.9 233 67.4
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 4.8e-72 275.4 208 71.2
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 5.9e-70 268.5 267 58.4
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 7.7e-70 268.1 148 86.5
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 8.5e-69 264.6 223 65.5
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.2e-67 260.8 159 83.0
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.6e-67 260.4 204 68.1
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.1e-63 246.1 149 82.6
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 6.5e-61 238.4 209 64.6
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 9.4e-60 234.6 167 73.7
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 2.1e-59 233.4 261 54.4
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 2.4e-55 219.9 134 76.1
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 2.4e-55 219.9 202 49.0
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 5.5e-52 208.8 130 81.5
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.4e-50 204.1 171 66.1
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.8e-47 193.7 353 39.4
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.3e-45 186.8 106 84.0
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 2.0e-38 163.7 185 51.9
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 8.6e-37 158.3 188 42.0
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 4.7e-35 152.5 200 41.0
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 8.3e-32 141.7 79 88.6
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.4e-31 140.2 225 38.7
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 9.2e-23 111.7 62 85.5
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 4.6e-22 109.4 62 83.9
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 2.1e-19 100.5 59 84.7
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 8.9e-18 95.1 120 53.3
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.0e-13 81.6 85 49.4
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.8e-11 72.8 154 39.6
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 6.2e-11 72.4 118 39.0
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.8e-10 70.9 36 88.9
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.4e-10 70.5 40 80.0
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 5.8e-09 65.9 37 83.8
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 9.9e-09 65.1 32 93.8
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.3e-08 64.7 55 63.6
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.4e-07 61.2 42 69.0
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 7.1e-07 58.9 34 79.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 7.1e-07 58.9 31 87.1


User provided reference genes

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