Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2932.1 1467 100.0
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2857.4 1467 97.6
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2305.4 1461 79.4
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2238.0 1462 77.4
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2233.8 1462 77.4
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2219.1 1474 76.5
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2192.9 1107 99.3
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 1951.4 1466 66.6
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 1906.0 1463 65.3
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 1893.6 1455 64.8
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 1892.9 1479 64.0
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 1878.2 1445 65.5
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1873.6 1459 64.5
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 1869.7 1495 63.6
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 1865.1 1480 64.4
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 1861.3 1466 64.5
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 1849.7 1464 63.7
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 1847.4 1472 63.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1835.5 1471 64.2
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1832.8 1469 63.9
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1813.5 1462 63.4
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1801.2 1456 62.2
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1799.6 1470 62.8
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 1798.5 1458 61.5
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1795.4 1458 61.5
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1786.9 1465 61.4
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1784.6 1492 60.1
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1783.5 1492 59.9
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 1781.5 1454 61.8
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1781.1 1492 60.2
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 1780.4 1462 62.0
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 1780.4 1505 61.4
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1778.5 1493 60.0
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1777.7 1492 60.1
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1776.5 1492 59.9
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 1741.9 1397 62.5
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 1733.8 1455 60.1
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 1726.1 1458 59.9
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1724.1 1426 60.2
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 1721.4 1452 59.6
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 1719.1 1458 63.8
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 1711.8 1462 58.9
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1711.4 1454 59.6
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 1702.2 1454 59.4
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 1701.4 1465 59.7
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1689.9 1468 58.7
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1688.3 1453 58.6
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1687.9 1464 58.6
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 1686.0 1456 59.0
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 1682.2 1487 58.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1674.1 1501 57.1
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 1672.5 1610 56.0
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 1667.1 1467 58.0
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 1656.0 1460 57.9
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 1651.3 1469 57.7
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 1639.0 1473 57.3
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 1633.2 1460 57.4
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1632.1 1463 56.8
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 1630.5 1473 57.3
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 1627.8 1464 57.3
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 1626.3 1417 58.1
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 1624.8 1460 56.9
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 1624.0 1461 56.9
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 1622.4 1465 57.1
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 1617.4 1470 55.7
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1615.1 1465 56.1
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1614.4 1463 56.9
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1612.8 1465 55.8
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1605.5 1429 57.3
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 1605.1 1457 57.0
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1604.3 1464 56.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1603.2 1466 56.3
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 1599.7 1458 56.2
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 1599.3 1456 56.9
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 1598.6 1455 57.3
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 1596.6 1456 55.8
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1594.7 1468 55.2
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 1594.7 1490 55.8
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 1594.3 1461 55.3
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1585.9 1487 55.6
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 1583.2 1456 55.3
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1580.1 1464 56.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 1579.7 1453 60.4
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1576.6 1457 56.3
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 1572.4 1460 54.9
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 1567.4 1478 55.3
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 1562.7 1465 54.9
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1560.8 1460 55.8
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 1556.6 1462 55.7
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1408.7 1459 51.3
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1364.4 1482 48.8
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1335.5 1423 50.4
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1331.2 1104 61.8
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1328.9 1104 61.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1264.6 1530 45.4
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1252.3 1540 44.6
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1182.5 1173 53.5
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 7.0e-311 1071.2 1038 53.6
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 6.0e-299 1031.6 1462 40.4
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 2.3e-298 1029.6 1020 53.2
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 8.4e-293 1011.1 962 55.0
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 6.3e-264 915.2 895 51.7
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 5.2e-234 815.8 766 53.3
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-233 814.3 855 51.1
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 5.4e-223 779.2 680 60.3
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 6.8e-218 762.3 1105 40.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 2.3e-213 747.3 551 68.6
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 8.4e-208 728.8 1496 33.6
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.9e-176 624.0 1129 34.4
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.6e-174 618.2 867 40.6
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 1.6e-171 608.2 486 64.4
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 6.7e-165 586.3 593 49.4
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 2.5e-164 584.3 416 71.2
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.8e-157 561.6 1284 29.5
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 1.5e-140 505.4 424 62.3
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 2.0e-140 505.0 409 63.8
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 4.5e-129 467.2 497 50.3
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 3.7e-123 447.6 324 66.0
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.6e-116 424.9 468 48.7
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 4.1e-114 417.5 473 46.5
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.2e-113 416.0 404 53.5
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.0e-104 386.3 265 71.3
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.3e-101 375.2 330 56.1
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.3e-91 342.8 416 45.9
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 3.0e-88 331.6 381 46.2
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 2.9e-83 315.1 329 50.2
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 7.9e-73 280.4 334 45.2
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.3e-70 273.1 479 35.7
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 4.5e-68 264.6 221 58.8
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 6.3e-54 217.6 277 46.9
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.4e-53 216.5 150 71.3
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.7e-51 209.5 275 47.6
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.7e-43 183.0 122 72.1
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.8e-43 181.8 188 50.0
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.8e-37 162.9 246 39.8
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 9.1e-37 160.6 827 22.1
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 1.2e-36 160.2 123 62.6
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 3.5e-36 158.7 120 70.0
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 4.5e-36 158.3 115 69.6
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 5.9e-36 157.9 1141 21.2
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 5.3e-29 134.8 98 66.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 9.7e-23 114.0 89 65.2
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 2.8e-22 112.5 157 41.4
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.8e-21 109.8 140 41.4
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.1e-21 108.6 196 37.2
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 8.8e-16 90.9 121 41.3
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 5.4e-13 81.6 119 38.7
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.6e-12 80.1 76 48.7
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 2.7e-12 79.3 97 45.4
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 7.2e-10 71.2 68 47.1
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 3.4e-07 62.4 42 78.6


User provided reference genes

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