Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.4e-96 356.7 240 100.0
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.0e-86 321.6 240 94.6
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.6e-76 290.0 258 65.1
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 7.5e-74 281.2 240 87.5
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.7e-70 270.0 240 85.8
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-70 269.6 258 62.0
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.5e-69 266.9 240 83.8
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.6e-69 265.0 240 85.0
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.0e-67 258.8 240 84.6
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.4e-64 249.6 200 95.0
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.2e-64 249.2 202 94.1
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 1.2e-63 247.3 240 79.2
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.1e-60 236.5 197 77.2
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 3.6e-60 235.7 243 77.4
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 4.7e-60 235.3 199 91.5
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 1.2e-58 230.7 240 77.5
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 2.6e-58 229.6 240 74.2
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.6e-58 228.0 131 90.1
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.6e-58 228.0 131 90.1
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.8e-57 225.7 131 89.3
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 3.8e-57 225.7 254 73.2
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 4.9e-57 225.3 242 76.0
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.9e-57 225.3 240 61.2
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.9e-57 225.3 131 89.3
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.9e-57 225.3 131 88.5
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 8.4e-57 224.6 240 75.4
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 2.4e-56 223.0 240 75.4
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 4.2e-56 222.2 240 76.2
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 5.4e-56 221.9 240 75.4
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 9.3e-56 221.1 243 73.7
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.6e-55 220.3 240 76.7
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 1.6e-55 220.3 239 73.6
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.1e-55 219.9 240 76.2
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 6.0e-55 218.4 240 74.2
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 6.0e-55 218.4 240 75.8
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 6.0e-55 218.4 243 75.3
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.8e-55 218.0 240 60.8
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.0e-54 217.6 133 85.7
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 1.0e-54 217.6 243 74.9
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-54 217.2 132 87.9
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.3e-54 217.2 240 73.3
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 1.3e-54 217.2 240 75.8
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.7e-54 216.9 240 74.2
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 3.9e-54 215.7 251 62.2
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 5.1e-54 215.3 242 74.8
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 6.6e-54 214.9 240 74.2
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 1.5e-53 213.8 240 72.1
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 2.5e-53 213.0 239 73.6
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 3.3e-53 212.6 230 75.7
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 3.3e-53 212.6 236 73.7
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 7.3e-53 211.5 240 72.1
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.6e-52 210.3 240 72.9
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 2.1e-52 209.9 240 72.9
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 2.1e-52 209.9 240 73.8
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 2.8e-52 209.5 240 72.1
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 2.8e-52 209.5 243 71.6
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 2.8e-52 209.5 264 56.8
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 3.6e-52 209.1 239 73.6
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 4.8e-52 208.8 226 76.1
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 8.1e-52 208.0 191 86.4
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 8.1e-52 208.0 242 71.9
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 5.3e-51 205.3 229 73.4
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 6.9e-51 204.9 241 71.8
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 6.9e-51 204.9 240 72.1
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 1.2e-50 204.1 244 72.5
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 3.4e-50 202.6 240 71.7
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 7.6e-50 201.4 250 71.6
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 9.9e-50 201.1 239 70.7
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 1.3e-49 200.7 242 71.1
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 1.7e-49 200.3 238 72.7
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 3.8e-49 199.1 243 71.6
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 4.9e-49 198.7 217 77.0
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 6.4e-49 198.4 244 70.5
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 8.4e-49 198.0 242 71.1
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 1.9e-48 196.8 244 69.7
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 2.4e-48 196.4 161 67.1
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 5.4e-48 195.3 196 79.6
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 9.3e-48 194.5 243 71.6
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 1.6e-47 193.7 233 72.1
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.7e-47 193.0 238 71.0
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 3.5e-47 192.6 201 79.6
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 4.6e-47 192.2 206 77.7
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 4.6e-47 192.2 242 69.4
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 6.0e-47 191.8 238 71.0
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.0e-47 191.8 238 71.0
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 6.0e-47 191.8 234 72.6
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 7.9e-47 191.4 229 71.2
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 7.9e-47 191.4 240 69.2
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.3e-46 190.7 240 60.0
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 2.3e-46 189.9 241 70.5
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 3.9e-46 189.1 202 76.7
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 5.1e-46 188.7 243 69.5
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 6.7e-46 188.3 234 70.9
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 8.7e-46 188.0 143 68.5
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 8.7e-46 188.0 211 77.3
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 3.3e-45 186.0 187 82.4
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 9.6e-45 184.5 241 69.7
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 1.6e-44 183.7 241 68.0
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 4.8e-44 182.2 241 65.6
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.1e-43 181.0 207 75.8
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.4e-43 180.6 241 66.4
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.8e-43 180.3 194 78.4
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 2.4e-43 179.9 241 64.7
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 3.1e-43 179.5 242 64.9
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 4.0e-43 179.1 241 66.4
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 4.0e-43 179.1 212 52.4
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 4.0e-43 179.1 212 52.4
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 6.9e-43 178.3 193 77.7
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 9.0e-43 177.9 240 65.4
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 1.2e-42 177.6 105 82.9
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 2.6e-42 176.4 241 64.7
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.6e-42 174.9 161 61.5
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.1e-40 171.0 243 65.4
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 4.2e-40 169.1 240 64.2
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 1.2e-39 167.5 243 65.0
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 1.2e-39 167.5 243 65.0
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 1.2e-39 167.5 243 65.0
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 6.0e-39 165.2 184 78.3
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.4e-35 154.1 166 82.5
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.8e-35 153.7 243 62.6
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 2.4e-35 153.3 191 70.7
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.2e-34 151.0 158 82.9
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.6e-34 149.8 157 84.7
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 7.6e-34 148.3 129 59.7
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 6.5e-33 145.2 126 61.9
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 9.7e-29 131.3 209 58.4
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 4.8e-28 129.0 153 79.1
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 5.3e-19 99.0 64 70.3
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.3e-09 67.8 106 81.1
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 8.5e-09 65.1 133 35.3
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 3.9e-06 56.2 83 42.2


User provided reference genes

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