Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 5.0e-48 194.1 99 100.0
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.2e-47 191.4 99 99.0
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.8e-45 183.7 99 96.0
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.4e-42 176.0 99 91.9
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 7.0e-42 173.7 99 89.9
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 2.7e-41 171.8 99 90.9
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.2e-36 156.4 100 83.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.5e-36 156.0 97 81.4
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.0e-36 155.6 98 81.6
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 7.5e-36 153.7 88 86.4
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 6.3e-35 150.6 107 80.4
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 8.3e-35 150.2 88 84.1
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.1e-34 149.8 100 80.0
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 3.1e-34 148.3 87 86.2
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 3.1e-34 148.3 98 76.5
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.1e-34 148.3 97 75.3
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 4.1e-34 147.9 96 80.2
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.1e-34 147.9 89 80.9
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 7.0e-34 147.1 94 78.7
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.6e-33 146.0 86 84.9
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.0e-33 145.6 88 84.1
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.0e-33 145.6 100 79.0
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 3.5e-33 144.8 88 83.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 4.5e-33 144.4 100 77.0
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 4.5e-33 144.4 88 83.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 7.8e-33 143.7 88 80.7
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 7.8e-33 143.7 102 74.5
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.3e-32 142.9 87 83.9
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 2.3e-32 142.1 87 83.9
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.9e-32 141.7 97 74.2
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 3.8e-32 141.4 88 81.8
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 5.0e-32 141.0 88 79.5
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 5.0e-32 141.0 87 83.9
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 5.0e-32 141.0 87 83.9
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 5.0e-32 141.0 91 80.2
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 6.6e-32 140.6 86 83.7
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 8.6e-32 140.2 81 85.2
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 8.6e-32 140.2 99 71.7
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 8.6e-32 140.2 85 81.2
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.1e-31 139.8 86 81.4
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.1e-31 139.8 100 74.0
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.9e-31 139.0 90 74.4
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.9e-31 139.0 84 82.1
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 3.3e-31 138.3 99 75.8
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 3.3e-31 138.3 99 75.8
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 3.3e-31 138.3 96 71.9
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 3.3e-31 138.3 85 81.2
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 4.3e-31 137.9 88 79.5
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.3e-31 137.1 95 74.7
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 9.5e-31 136.7 101 73.3
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.2e-30 136.3 101 71.3
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.6e-30 136.0 96 70.8
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.6e-30 136.0 86 77.9
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 2.1e-30 135.6 81 86.4
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 2.1e-30 135.6 86 80.2
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.6e-30 134.8 86 75.6
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 4.7e-30 134.4 99 67.7
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 4.7e-30 134.4 82 79.3
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 6.1e-30 134.0 86 79.1
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 6.1e-30 134.0 81 82.7
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 6.1e-30 134.0 89 75.3
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 6.1e-30 134.0 89 77.5
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 8.0e-30 133.7 80 80.0
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.0e-29 133.3 92 70.7
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.0e-29 133.3 87 75.9
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.4e-29 132.9 92 70.7
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.4e-29 132.9 83 79.5
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.8e-29 132.5 96 66.7
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.3e-29 132.1 99 72.7
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.0e-29 131.7 81 84.0
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.0e-29 131.7 81 84.0
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.0e-29 131.7 81 84.0
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.0e-29 131.7 92 69.6
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.0e-29 131.3 81 79.0
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 4.0e-29 131.3 94 72.3
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 4.0e-29 131.3 86 74.4
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 4.0e-29 131.3 85 82.4
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 4.0e-29 131.3 86 76.7
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 4.0e-29 131.3 81 80.2
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 8.9e-29 130.2 86 76.7
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 8.9e-29 130.2 78 83.3
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.2e-28 129.8 81 84.0
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.5e-28 129.4 81 84.0
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.0e-28 129.0 81 79.0
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 2.6e-28 128.6 94 71.3
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 2.6e-28 128.6 94 71.3
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.6e-28 128.6 80 80.0
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.6e-28 128.6 80 80.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 5.7e-28 127.5 81 82.7
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 2.9e-27 125.2 90 68.9
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.9e-27 125.2 94 68.1
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 3.7e-27 124.8 79 81.0
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 4.9e-27 124.4 92 66.3
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 8.3e-27 123.6 80 75.0
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 8.3e-27 123.6 80 75.0
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 8.3e-27 123.6 80 75.0
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 79.0
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 76.5
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.1e-26 123.2 88 71.6
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.8e-26 122.5 92 65.2
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.8e-26 122.5 92 65.2
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.4e-26 122.1 94 64.9
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.4e-26 122.1 94 66.0
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 2.4e-26 122.1 80 73.8
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.4e-26 122.1 90 71.1
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.4e-26 122.1 73 86.3
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.2e-26 121.7 88 72.7
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.1e-26 121.3 78 75.6
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 5.4e-26 120.9 94 64.9
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 7.0e-26 120.6 94 64.9
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 7.0e-26 120.6 94 64.9
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 7.0e-26 120.6 92 65.2
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 7.0e-26 120.6 75 82.7
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 9.2e-26 120.2 75 81.3
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.2e-25 119.8 80 71.2
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.0e-25 119.0 93 63.4
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-25 119.0 93 63.4
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-25 119.0 93 63.4
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-25 119.0 93 63.4
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 2.7e-25 118.6 83 68.7
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.6e-25 117.9 76 78.9
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 7.8e-25 117.1 81 77.8
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.0e-24 116.7 80 77.5
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 5.0e-24 114.4 81 72.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.9e-23 112.5 78 69.2
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.9e-23 112.5 78 69.2
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.9e-23 112.5 78 69.2
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 4.3e-23 111.3 75 74.7
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 7.3e-23 110.5 80 76.2
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.1e-21 105.1 83 68.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.4e-20 101.7 74 70.3
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 6.4e-19 97.4 54 85.2
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.1e-18 96.7 83 55.4
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 2.4e-18 95.5 79 60.8
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 5.4e-18 94.4 78 62.8
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.7e-17 92.0 67 71.6
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.7e-16 89.4 92 53.3
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.5e-15 86.3 57 71.9
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.5e-15 85.5 83 57.8
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 2.5e-15 85.5 94 54.3
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.0e-13 78.2 52 73.1
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.0e-13 78.2 52 73.1
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 3.4e-12 75.1 65 60.0
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 4.9e-11 71.2 82 43.9
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 7.1e-10 67.4 40 82.5


User provided reference genes

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