Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G201300 Gossypium raimondii HOM05D005573 ORTHO05D007161 5.2e-99 364.4 183 100.0
Gohir.D09G179300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 4.5e-95 351.3 183 96.7
Gohir.A08G157500 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.6e-87 326.2 182 92.3
PGR111G0074 Punica granatum HOM05D005573 ORTHO05D007161 5.4e-80 301.2 182 84.6
Nn1g10181 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.0e-79 299.3 182 84.6
Nn1g10183 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.0e-79 299.3 182 84.6
A06p23260 Brassica napus HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
BNapus_Darmor_BZH_scaffold_287p00070 Brassica napus HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
BolSC45t60866H Brassica oleracea HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
BolSC45t60946H Brassica oleracea HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
BolSC46t60993H Brassica oleracea HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
BolSC46t61042H Brassica oleracea HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
BraA06t25428Z Brassica rapa HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
BraSC140t45578Z Brassica rapa HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
BraSC151t45711Z Brassica rapa HOM05D005573 ORTHO05D007161 5.9e-79 297.7 182 84.6
CARHR282030 Cardamine hirsuta HOM05D005573 ORTHO05D007161 1.7e-78 296.2 182 84.1
Hma1.2p1_0248F.1_g102160 Hydrangea macrophylla HOM05D005573 ORTHO05D007161 1.7e-78 296.2 182 85.2
PSO548G0019 Papaver somniferum HOM05D005573 ORTHO05D007161 2.3e-78 295.8 182 84.1
AL2G21420 Arabidopsis lyrata HOM05D005573 ORTHO05D007161 6.6e-78 294.3 182 84.1
AL2G20730 Arabidopsis lyrata HOM05D005573 ORTHO05D007161 1.9e-77 292.7 182 83.5
Migut.D01426 Erythranthe guttata HOM05D005573 ORTHO05D007161 3.3e-77 292.0 182 83.0
Sed0002328 Sechium edule HOM05D005573 ORTHO05D007161 5.6e-77 291.2 182 82.4
Sed0008322 Sechium edule HOM05D005573 ORTHO05D007161 5.6e-77 291.2 182 82.4
ATCG00380 Arabidopsis thaliana HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 83.0
HanXRQChr02g0041471 Helianthus annuus HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 84.1
HanXRQChr02g0044961 Helianthus annuus HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 84.1
HanXRQChr07g0201021 Helianthus annuus HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 84.1
HanXRQChr08g0210291 Helianthus annuus HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 84.1
HanXRQChr10g0289201 Helianthus annuus HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 84.1
HanXRQChr11g0326731 Helianthus annuus HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 84.1
HanXRQCPg0579941 Helianthus annuus HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 84.1
Lsat_1_v5_gn_3_99201 Lactuca sativa HOM05D005573 ORTHO05D007161 7.3e-77 290.8 182 83.5
Gohir.D04G083800 Gossypium hirsutum HOM05D005573 ORTHO05D007161 9.5e-77 290.4 182 84.6
CAN.G551.66 Capsicum annuum HOM05D005573 ORTHO05D007161 1.6e-76 289.7 182 82.4
CAN.G65.126 Capsicum annuum HOM05D005573 ORTHO05D007161 1.6e-76 289.7 182 82.4
DCAR_032486 Daucus carota HOM05D005573 ORTHO05D007161 1.6e-76 289.7 182 82.4
SalBow1G4134 Salvia bowleyana HOM05D005573 ORTHO05D007161 1.8e-75 286.2 182 81.3
arahy.Tifrunner.gnm1.ann1.DMW7HF Arachis hypogaea HOM05D005573 ORTHO05D007161 4.0e-75 285.0 180 81.1
BolSC49t61189H Brassica oleracea HOM05D005573 ORTHO05D007161 4.0e-75 285.0 184 82.6
CAN.G1183.7 Capsicum annuum HOM05D005573 ORTHO05D007161 4.0e-75 285.0 182 81.3
Medtr4g051220 Medicago truncatula HOM05D005573 ORTHO05D007161 2.6e-74 282.3 182 80.8
LjContig00318g0014176 Lotus japonicus HOM05D005573 ORTHO05D007161 9.8e-74 280.4 182 79.7
EL10As12g24021 Beta vulgaris HOM05D005573 ORTHO05D007161 1.4e-72 276.6 178 80.3
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 1.8e-72 276.2 182 79.1
Glyma.01G153400 Glycine max HOM05D005573 ORTHO05D007161 1.0e-70 270.4 182 75.8
Oeu012806.1 Olea europaea HOM05D005573 ORTHO05D007161 5.6e-69 264.6 182 75.8
Zm00001eb039080 Zea mays HOM05D005573 ORTHO05D007161 1.2e-68 263.5 182 73.6
Zm00001eb039210 Zea mays HOM05D005573 ORTHO05D007161 1.2e-68 263.5 182 73.6
Zm00001eb435020 Zea mays HOM05D005573 ORTHO05D007161 1.2e-68 263.5 182 73.6
Zm00001eb435220 Zea mays HOM05D005573 ORTHO05D007161 1.2e-68 263.5 182 73.6
Zm00001eb435420 Zea mays HOM05D005573 ORTHO05D007161 1.2e-68 263.5 182 73.6
Zm00001eb435680 Zea mays HOM05D005573 ORTHO05D007161 1.2e-68 263.5 182 73.6
Zm00001eb440990 Zea mays HOM05D005573 ORTHO05D007161 1.2e-68 263.5 182 73.6
Medtr0002s0590 Medicago truncatula HOM05D005573 ORTHO05D007161 1.6e-68 263.1 182 73.1
Lj4g0013543 Lotus japonicus HOM05D005573 ORTHO05D007161 2.3e-67 259.2 182 75.3
C09p29560 Brassica napus HOM05D005573 ORTHO05D007161 2.0e-66 256.1 155 86.5
Lj2P1237T91 Lonicera japonica HOM05D005573 ORTHO05D007161 2.0e-66 256.1 184 77.2
Lj2P1239T179 Lonicera japonica HOM05D005573 ORTHO05D007161 2.0e-66 256.1 184 77.2
Zm00001eb231240 Zea mays HOM05D005573 ORTHO05D007161 2.4e-64 249.2 177 71.8
PGSC0003DMG400024039 Solanum tuberosum HOM05D005573 ORTHO05D007161 4.1e-64 248.4 162 80.2
Zm00001eb039100 Zea mays HOM05D005573 ORTHO05D007161 5.4e-64 248.1 172 73.8
Gohir.A09G103300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 9.2e-64 247.3 166 80.1
Nitab4.5_0006596g0030 Nicotiana tabacum HOM05D005573 ORTHO05D007161 1.4e-59 233.4 148 83.1
Lalb_Chr07g0191491 Lupinus albus HOM05D005573 ORTHO05D007161 6.8e-59 231.1 151 80.1
Thhalv10010766m.g Eutrema salsugineum HOM05D005573 ORTHO05D007161 6.6e-54 214.5 182 66.5
GSVIVG01021975001 Vitis vinifera HOM05D005573 ORTHO05D007161 1.1e-53 213.8 132 84.1
SEGI_18745 Sequoiadendron giganteum HOM05D005573 ORTHO05D007161 2.0e-50 203.0 186 60.2
TWI60G0396 Tripterygium wilfordii HOM05D005573 ORTHO05D007161 9.9e-50 200.7 118 83.9
Solyc09g015330.2 Solanum lycopersicum HOM05D005573 ORTHO05D007161 5.4e-48 194.9 137 76.6
arahy.Tifrunner.gnm1.ann1.NT5R3P Arachis hypogaea HOM05D005573 ORTHO05D007161 1.3e-46 190.3 149 69.1
Oeu062838.1 Olea europaea HOM05D005573 ORTHO05D007161 2.4e-43 179.5 120 79.2
Gohir.A10G100366 Gossypium hirsutum HOM05D005573 ORTHO05D007161 3.1e-43 179.1 94 93.6
CDE08G0454 Ceratophyllum demersum HOM05D000219 ORTHO05D000226 5.2e-43 178.3 114 78.9
Gohir.A07G163636 Gossypium hirsutum HOM05D005573 ORTHO05D007161 7.6e-42 174.5 94 92.6
ClCG00G003940 Citrullus lanatus HOM05D005573 ORTHO05D007161 2.7e-39 166.0 101 86.1
Nn2g13212 Nelumbo nucifera HOM05D005573 ORTHO05D007161 3.9e-38 162.2 94 85.1
Nn423s46610 Nelumbo nucifera HOM05D005573 ORTHO05D007161 3.9e-38 162.2 94 85.1
Nn6g33243 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.5e-37 159.5 94 84.0
Phvul.011G056580 Phaseolus vulgaris HOM05D005573 ORTHO05D007161 5.6e-37 158.3 100 81.0
Eucgr.B02956 Eucalyptus grandis HOM05D005573 ORTHO05D007161 2.8e-36 156.0 94 79.8
HanXRQChr13g0413641 Helianthus annuus HOM05D005573 ORTHO05D007161 2.6e-34 149.4 94 80.9
HanXRQChr13g0413711 Helianthus annuus HOM05D005573 ORTHO05D007161 2.6e-34 149.4 94 80.9
HanXRQChr13g0413781 Helianthus annuus HOM05D005573 ORTHO05D007161 2.6e-34 149.4 94 80.9
HanXRQChr13g0413861 Helianthus annuus HOM05D005573 ORTHO05D007161 2.6e-34 149.4 94 80.9
HanXRQChr13g0413931 Helianthus annuus HOM05D005573 ORTHO05D007161 2.6e-34 149.4 94 80.9
Migut.D01353 Erythranthe guttata HOM05D005573 ORTHO05D007161 2.2e-33 146.4 140 61.4
Zm00001eb438350 Zea mays HOM05D005573 ORTHO05D007161 2.2e-33 146.4 94 74.5
Gohir.A09G045446 Gossypium hirsutum HOM05D005573 ORTHO05D007161 2.7e-31 139.4 72 97.2
Zm00001eb434930 Zea mays HOM05D005573 ORTHO05D007161 1.0e-30 137.5 89 74.2
BraSC25t45875Z Brassica rapa HOM05D005573 ORTHO05D007161 8.7e-30 134.4 83 78.3
Potri.013G163300 Populus trichocarpa HOM05D005573 ORTHO05D007161 1.9e-29 133.3 83 78.3
CAN.G1478.12 Capsicum annuum HOM05D005573 ORTHO05D007161 4.8e-28 128.6 83 77.1
Lalb_Chr15g0080691 Lupinus albus HOM05D005573 ORTHO05D007161 3.1e-27 125.9 83 72.3
SMO086G0035 Selaginella moellendorffii HOM05D005573 ORTHO05D007161 4.0e-27 125.6 129 55.8
SMO086G0038 Selaginella moellendorffii HOM05D005573 ORTHO05D007161 4.0e-27 125.6 129 55.8
Solyc09g015310.3 Solanum lycopersicum HOM05D005573 ORTHO05D007161 4.0e-27 125.6 83 73.5
BolC9t56936H Brassica oleracea HOM05D005573 ORTHO05D007161 1.5e-26 123.6 77 83.1
Nn5g30925 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.6e-26 122.9 70 82.9
TAR625G0941 Trochodendron aralioides HOM05D005573 ORTHO05D007161 3.4e-26 122.5 75 78.7
Gohir.A09G045300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 5.8e-26 121.7 73 86.3
SEGI_40009 Sequoiadendron giganteum HOM05D005573 ORTHO05D007161 5.8e-26 121.7 108 63.0
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 1.3e-25 120.6 79 75.9
CAN.G100.47 Capsicum annuum HOM05D005573 ORTHO05D007161 2.9e-25 119.4 83 72.3
CAN.G129.6 Capsicum annuum HOM05D005573 ORTHO05D007161 2.9e-25 119.4 83 71.1
CiPaw.12G056900 Carya illinoinensis HOM05D005573 ORTHO05D007161 1.1e-24 117.5 78 75.6
Phvul.008G150500 Phaseolus vulgaris HOM05D005573 ORTHO05D007161 1.4e-24 117.1 74 70.3
BolSC29t60458H Brassica oleracea HOM05D005573 ORTHO05D007161 7.1e-24 114.8 82 72.0
BolSC47t61104H Brassica oleracea HOM05D005573 ORTHO05D007161 7.1e-24 114.8 82 72.0
HanXRQChr00c0345g0573881 Helianthus annuus HOM05D005573 ORTHO05D007161 9.3e-24 114.4 67 86.6
Nn071s42388 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.0e-22 110.9 77 80.5
Oeu056456.1 Olea europaea HOM05D005573 ORTHO05D007161 1.8e-22 110.2 66 80.3
Solyc11g022610.1 Solanum lycopersicum HOM05D005573 ORTHO05D007161 1.8e-22 110.2 99 64.6
CAN.G63.13 Capsicum annuum HOM05D005573 ORTHO05D007161 3.9e-22 109.0 77 70.1
BolSC47t61119H Brassica oleracea HOM05D005573 ORTHO05D007161 1.1e-21 107.5 64 87.5
arahy.Tifrunner.gnm1.ann1.NAZW4C Arachis hypogaea HOM05D005573 ORTHO05D007161 7.4e-21 104.8 94 60.6
BolC7t41664H Brassica oleracea HOM05D005573 ORTHO05D007161 1.3e-20 104.0 71 70.4
Mapoly0090s0058 Marchantia polymorpha HOM05D005573 ORTHO05D007161 6.2e-20 101.7 66 72.7
TAR375G0006 Trochodendron aralioides HOM05D005573 ORTHO05D007161 3.1e-19 99.4 61 82.0
MELO3C027485.2 Cucumis melo HOM05D005573 ORTHO05D007161 4.9e-17 92.0 50 88.0
MELO3C022836.2 Cucumis melo HOM05D005573 ORTHO05D007161 1.9e-16 90.1 49 87.8
Nn055s41940 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.0e-14 84.3 59 74.6
BraSC25t45840Z Brassica rapa HOM05D005573 ORTHO05D007161 1.9e-13 80.1 52 82.7
Nn021s41552 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.3e-12 77.4 41 92.7
ClCG11G007200 Citrullus lanatus HOM05D005573 ORTHO05D007161 6.9e-11 71.6 46 73.9
BolC9t55817H Brassica oleracea HOM05D005573 ORTHO05D007161 1.7e-09 67.0 48 75.0
BolSC29t60581H Brassica oleracea HOM05D005573 ORTHO05D007161 2.9e-09 66.2 36 94.4
CAN.G653.3 Capsicum annuum HOM05D005573 ORTHO05D007161 1.4e-08 63.9 45 71.1
CAN.G331.1 Capsicum annuum HOM05D005573 ORTHO05D007161 2.1e-07 60.1 44 63.6
Gorai.006G198900 Gossypium raimondii HOM05D005573 ORTHO05D007161 3.6e-07 59.3 33 75.8
Glyma.18G203700 Glycine max HOM05D005573 ORTHO05D007161 1.4e-06 57.4 40 70.0
Oeu042745.1 Olea europaea HOM05D005573 ORTHO05D007161 5.1e-06 55.5 94 42.6
Oeu052069.1 Olea europaea HOM05D005573 ORTHO05D007161 8.8e-06 54.7 94 42.6


User provided reference genes

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