Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.3e-153 547.0 429 100.0
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.1e-151 539.7 429 92.5
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.0e-149 533.1 429 98.4
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.0e-109 400.2 311 79.1
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 7.3e-104 381.7 310 76.1
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 2.1e-98 363.6 304 76.0
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 4.6e-90 335.9 297 71.4
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.0e-84 318.2 311 64.3
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.0e-84 318.2 311 64.6
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.2e-84 317.0 311 64.3
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 3.7e-79 299.7 275 56.0
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 5.3e-78 295.8 273 71.8
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 9.0e-78 295.0 272 58.5
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 2.6e-77 293.5 275 57.5
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 7.6e-77 292.0 275 60.0
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.0e-76 291.6 268 59.3
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 1.3e-76 291.2 268 54.9
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.9e-76 290.0 274 55.1
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 6.5e-76 288.9 268 54.5
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 6.5e-76 288.9 268 54.5
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 8.4e-76 288.5 276 67.4
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 2.5e-75 287.0 276 67.4
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.5e-75 285.8 268 53.7
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.5e-75 285.8 268 53.7
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 7.1e-75 285.4 268 58.2
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 3.0e-73 280.0 273 51.6
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 3.9e-73 279.6 312 61.2
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 1.1e-72 278.1 304 48.4
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 5.7e-72 275.8 268 53.0
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 5.7e-72 275.8 296 52.7
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 7.4e-72 275.4 268 53.0
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.6e-71 274.2 276 52.9
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 3.7e-71 273.1 288 49.0
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 3.7e-71 273.1 268 51.1
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 3.7e-71 273.1 278 51.1
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.8e-71 272.7 301 46.8
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 6.3e-71 272.3 280 55.0
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 8.2e-71 271.9 268 51.9
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 8.2e-71 271.9 275 60.4
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.1e-70 271.6 301 47.2
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.4e-70 271.2 320 45.0
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 2.4e-70 270.4 298 48.0
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.1e-70 269.6 275 56.4
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 4.1e-70 269.6 302 47.4
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 5.3e-70 269.2 301 46.8
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 9.0e-70 268.5 278 47.8
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.5e-69 267.7 275 59.3
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.5e-69 267.7 277 55.2
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.5e-69 267.7 274 57.7
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 2.0e-69 267.3 306 48.0
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 2.6e-69 266.9 267 52.4
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.6e-69 266.9 275 50.2
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 4.5e-69 266.2 304 58.9
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 5.9e-69 265.8 303 49.2
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.3e-68 264.6 273 51.6
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 1.7e-68 264.2 303 46.2
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 2.2e-68 263.8 275 53.8
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 2.2e-68 263.8 234 54.7
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 6.5e-68 262.3 301 45.2
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 6.5e-68 262.3 303 47.2
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.1e-67 261.5 273 50.9
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.9e-67 260.8 302 47.0
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.9e-67 260.8 275 47.6
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.5e-67 260.4 303 47.2
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 3.2e-67 260.0 271 62.0
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 4.2e-67 259.6 278 50.7
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 4.2e-67 259.6 272 49.6
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 5.5e-67 259.2 292 46.9
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 7.2e-67 258.8 274 45.6
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.6e-66 257.7 292 51.0
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.1e-66 257.3 273 50.9
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 2.7e-66 256.9 268 53.7
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 4.6e-66 256.1 274 47.4
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 4.6e-66 256.1 275 51.6
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 6.1e-66 255.8 284 45.4
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 7.9e-66 255.4 294 58.5
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 7.9e-66 255.4 284 45.4
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 1.0e-65 255.0 268 51.9
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 1.8e-65 254.2 319 55.5
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.8e-65 254.2 267 62.5
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 2.3e-65 253.8 267 60.7
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 3.9e-65 253.1 300 44.3
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 3.9e-65 253.1 314 44.6
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 5.1e-65 252.7 284 46.1
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 6.7e-65 252.3 279 45.9
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.1e-64 251.5 267 61.0
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 2.5e-64 250.4 274 54.0
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 2.5e-64 250.4 269 64.7
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 3.3e-64 250.0 304 43.4
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 4.3e-64 249.6 269 46.1
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 5.7e-64 249.2 267 52.1
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 7.4e-64 248.8 295 49.2
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 7.4e-64 248.8 267 50.2
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 9.7e-64 248.4 309 55.0
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 9.7e-64 248.4 234 53.0
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 9.7e-64 248.4 267 62.2
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 1.7e-63 247.7 269 64.3
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 2.2e-63 247.3 273 47.3
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 3.7e-63 246.5 267 51.7
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 4.8e-63 246.1 271 46.9
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 4.8e-63 246.1 268 49.6
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 4.8e-63 246.1 283 44.5
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 8.2e-63 245.4 298 46.0
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 8.2e-63 245.4 319 43.6
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 8.2e-63 245.4 268 47.0
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 8.2e-63 245.4 275 45.5
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 1.1e-62 245.0 281 50.2
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.4e-62 244.6 236 55.5
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 1.4e-62 244.6 267 49.4
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 3.1e-62 243.4 236 49.6
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 4.1e-62 243.0 282 59.9
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.5e-61 241.1 267 47.2
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.5e-61 241.1 296 44.3
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.3e-60 238.0 261 46.7
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.7e-60 237.7 236 56.8
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 3.8e-60 236.5 268 57.8
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 5.0e-60 236.1 308 54.9
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 5.0e-60 236.1 308 54.9
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 6.5e-60 235.7 275 45.1
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.5e-60 235.7 269 62.1
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 1.1e-59 235.0 294 45.2
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 1.1e-59 235.0 251 49.8
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.5e-59 233.8 234 47.9
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 3.2e-59 233.4 288 55.6
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 4.2e-59 233.0 273 46.5
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 7.2e-59 232.3 268 57.1
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 9.4e-59 231.9 281 45.6
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 7.9e-58 228.8 264 45.8
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.4e-57 228.0 276 47.1
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 1.5e-56 224.6 312 41.3
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 1.5e-56 224.6 312 41.3
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 2.0e-56 224.2 313 41.9
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 6.3e-55 219.2 313 40.9
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 1.5e-51 208.0 136 69.9
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 1.6e-50 204.5 293 42.3
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.7e-50 203.8 365 34.5
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 7.4e-48 195.7 264 41.3
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 1.1e-43 181.8 241 39.0
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 2.5e-43 180.6 138 60.9
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.2e-40 171.8 272 36.0
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.7e-36 157.9 215 41.9
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.5e-35 154.8 267 42.3
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.9e-35 154.5 267 42.7
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 5.5e-35 152.9 143 51.7
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 9.4e-35 152.1 267 40.1
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 6.1e-34 149.4 268 47.8
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.4e-33 148.3 268 39.9
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 6.8e-33 146.0 271 32.5
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.0e-32 144.4 274 34.3
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 2.6e-32 144.1 269 33.1
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.1e-30 137.1 165 64.2
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 2.0e-29 134.4 224 33.9
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.2e-24 118.6 217 32.3
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 9.8e-24 115.5 218 29.8
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 1.1e-22 112.1 238 30.3
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.1e-22 112.1 203 33.5
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 1.4e-22 111.7 108 45.4
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 3.2e-22 110.5 282 33.3
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 3.2e-22 110.5 282 33.3
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.1e-22 110.2 103 47.6
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.7e-21 107.5 78 67.9
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.7e-21 107.5 78 67.9
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 1.9e-19 101.3 117 52.1
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 8.0e-18 95.9 237 25.7
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.0e-16 91.3 130 37.7
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.4e-14 84.3 88 51.1
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.0e-12 79.0 266 29.7
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 1.6e-10 71.6 62 53.2
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.5e-08 65.1 101 37.6
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.7e-07 61.6 52 57.7
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 5.4e-06 56.6 39 64.1


User provided reference genes

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