Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 2.0e-283 978.4 474 100.0
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.1e-281 972.6 474 99.4
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 7.5e-275 949.9 474 97.0
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.3e-234 816.2 474 82.3
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 4.5e-195 684.9 468 70.3
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 5.8e-195 684.5 473 70.4
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 6.0e-192 674.5 471 69.2
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 1.8e-191 672.9 475 68.4
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 3.3e-190 668.7 468 70.1
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 1.2e-187 660.2 388 83.2
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 3.4e-187 658.7 469 68.0
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 2.5e-185 652.5 470 66.4
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 1.2e-179 633.6 476 65.1
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 2.2e-178 629.4 483 65.0
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 4.2e-177 625.2 475 64.2
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 9.4e-177 624.0 472 63.1
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 8.8e-175 617.5 475 64.0
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 1.1e-174 617.1 469 64.2
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 2.6e-174 615.9 475 63.8
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 7.4e-174 614.4 472 63.6
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 2.4e-172 609.4 498 60.6
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 4.5e-171 605.1 473 61.3
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 2.2e-170 602.8 470 63.0
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 3.8e-170 602.1 472 62.5
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 3.8e-170 602.1 468 62.8
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 5.0e-170 601.7 468 63.0
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 1.9e-169 599.7 457 64.1
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 5.2e-167 591.7 477 59.5
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 9.7e-166 587.4 470 61.7
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 2.8e-165 585.9 518 55.8
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 4.8e-165 585.1 485 59.2
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 2.4e-164 582.8 452 64.2
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.7e-162 576.6 471 61.4
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 8.5e-162 574.3 445 67.4
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 2.1e-160 569.7 470 60.2
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 1.0e-159 567.4 471 58.6
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 2.3e-159 566.2 475 57.9
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.6e-158 562.8 480 57.1
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 7.5e-158 561.2 477 57.9
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 9.7e-158 560.8 469 61.0
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 9.7e-158 560.8 475 57.7
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 7.0e-156 554.7 472 58.1
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 2.7e-155 552.7 531 55.4
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 7.7e-155 551.2 464 56.2
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 5.5e-153 545.0 456 58.1
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 8.0e-152 541.2 469 57.1
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 2.0e-150 536.6 470 56.0
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.3e-149 533.9 567 51.3
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 2.7e-147 526.2 472 55.1
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 3.8e-146 522.3 470 54.9
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 9.5e-145 517.7 377 66.8
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 2.0e-142 510.0 466 57.1
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 3.7e-141 505.8 473 54.1
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 8.3e-141 504.6 389 62.0
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 1.1e-140 504.2 478 52.7
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 5.4e-140 501.9 470 52.8
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 1.6e-139 500.4 471 52.7
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 2.7e-139 499.6 473 52.9
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 3.5e-139 499.2 472 53.0
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 1.0e-138 497.7 473 52.2
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 3.8e-138 495.7 475 54.5
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 3.8e-138 495.7 474 53.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 5.6e-137 491.9 472 52.1
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 2.8e-136 489.6 385 63.6
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 6.8e-135 485.0 512 49.2
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.6e-134 483.0 473 52.4
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 4.4e-134 482.3 473 53.3
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 7.5e-134 481.5 489 51.7
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 3.7e-133 479.2 469 53.5
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 6.4e-133 478.4 511 48.5
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 7.0e-132 474.9 472 50.4
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 2.7e-131 473.0 517 48.0
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 3.5e-131 472.6 387 61.0
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 9.5e-129 464.5 470 50.9
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 1.6e-128 463.8 462 51.5
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.6e-128 462.6 475 50.9
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 6.8e-127 458.4 479 49.3
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 1.2e-126 457.6 474 52.1
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 7.5e-126 454.9 515 47.4
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.3e-125 454.1 470 52.1
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 6.8e-119 431.8 512 45.7
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 2.2e-117 426.8 509 47.3
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 8.3e-117 424.9 466 47.4
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 1.8e-111 407.1 475 46.7
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 2.2e-109 400.2 473 46.3
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 2.2e-109 400.2 327 59.6
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 1.8e-103 380.6 325 54.8
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 3.2e-100 369.8 462 42.6
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 2.7e-99 366.7 308 59.1
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.4e-92 343.6 253 65.6
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 3.2e-92 343.2 274 60.6
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 5.1e-90 335.9 282 56.4
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.9e-89 334.0 287 57.8
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 3.4e-86 323.2 286 57.0
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 7.4e-81 305.4 462 35.1
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 9.6e-81 305.1 328 49.7
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.8e-79 300.8 303 53.1
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 1.8e-71 274.2 204 60.8
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 1.0e-69 268.5 513 34.5
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.4e-63 248.1 158 70.9
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 4.1e-63 246.5 188 63.8
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.2e-62 245.0 226 54.9
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.2e-62 245.0 164 70.7
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 3.8e-61 240.0 186 61.3
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 7.9e-59 232.3 184 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 2.2e-56 224.2 485 33.4
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 4.1e-47 193.4 162 57.4
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-40 171.8 351 33.6
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 8.0e-35 152.5 131 53.4
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.2e-30 138.7 191 40.3
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 5.7e-25 119.8 85 65.9
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 1.4e-23 115.2 144 44.4
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 1.1e-20 105.5 91 57.1
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 8.9e-18 95.9 357 26.6
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 4.9e-16 90.1 291 27.5
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.4e-15 88.6 91 49.5
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.4e-15 87.8 53 69.8
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 6.0e-14 83.2 153 34.6
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 3.4e-09 67.4 100 40.0
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 9.8e-09 65.9 56 51.8
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 8.3e-08 62.8 55 52.7
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 7.0e-07 59.7 58 46.6
QL01p005881 Quercus lobata HOM05D006389 ORTHO05D007863 4.6e-06 57.0 79 43.0


User provided reference genes

Program Settings