Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G004900 Gossypium raimondii HOM05D001129 ORTHO05D003814 6.9e-59 230.3 109 100.0
Gorai.007G260700 Gossypium raimondii HOM05D001129 ORTHO05D003814 6.7e-54 213.8 109 89.9
Gohir.D08G133750 Gossypium hirsutum HOM05D001129 ORTHO05D003814 4.5e-50 201.1 94 96.8
Gohir.D09G051901 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.9e-40 169.1 87 88.5
Gorai.009G402100 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.9e-40 169.1 87 88.5
Gohir.D11G291701 Gossypium hirsutum HOM05D001129 ORTHO05D015145 9.4e-40 166.8 87 87.4
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 5.2e-38 161.0 87 83.9
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 5.2e-38 161.0 87 83.9
Gohir.D07G130166 Gossypium hirsutum HOM05D001129 ORTHO05D003814 8.8e-38 160.2 86 87.2
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 4.4e-37 157.9 87 81.6
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 4.4e-37 157.9 87 82.8
Gorai.009G417200 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.7e-36 156.0 86 84.9
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 2.2e-36 155.6 87 79.3
Gorai.001G201100 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.6e-34 149.4 87 80.5
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 5.0e-33 144.4 87 74.7
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 8.0e-31 137.1 96 63.5
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.4e-30 136.3 96 62.5
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 4.0e-30 134.8 96 63.5
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 6.8e-30 134.0 96 61.5
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 6.8e-30 134.0 89 66.3
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 8.8e-30 133.7 81 72.8
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 8.8e-30 133.7 96 64.6
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 1.2e-29 133.3 89 65.2
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 1.5e-29 132.9 96 62.5
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 2.0e-29 132.5 96 61.5
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 2.6e-29 132.1 96 63.5
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 2.6e-29 132.1 87 66.7
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 4.4e-29 131.3 96 61.5
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 4.4e-29 131.3 96 61.5
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 7.5e-29 130.6 87 65.5
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 7.5e-29 130.6 89 66.3
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 9.8e-29 130.2 89 66.3
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 9.8e-29 130.2 89 65.2
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 1.3e-28 129.8 89 64.0
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 1.3e-28 129.8 89 65.2
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 1.7e-28 129.4 89 65.2
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 1.7e-28 129.4 89 66.3
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 1.7e-28 129.4 89 65.2
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 2.2e-28 129.0 89 64.0
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 2.2e-28 129.0 87 65.5
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 3.7e-28 128.3 89 64.0
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 3.7e-28 128.3 89 62.9
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 4.8e-28 127.9 87 64.4
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 8.3e-28 127.1 96 59.4
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 8.3e-28 127.1 89 66.3
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.1e-27 126.7 89 62.9
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 1.1e-27 126.7 89 62.9
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.4e-27 126.3 81 67.9
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 1.4e-27 126.3 96 59.4
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 2.4e-27 125.6 96 55.2
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 2.4e-27 125.6 96 58.3
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 3.1e-27 125.2 87 62.1
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 3.1e-27 125.2 89 62.9
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.1e-27 125.2 90 62.2
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 4.1e-27 124.8 89 62.9
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 4.1e-27 124.8 87 62.1
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 4.1e-27 124.8 96 58.3
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 5.4e-27 124.4 89 58.4
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 5.4e-27 124.4 89 60.7
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 7.0e-27 124.0 89 60.7
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 7.0e-27 124.0 89 60.7
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 7.0e-27 124.0 89 60.7
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 9.1e-27 123.6 89 65.2
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 9.1e-27 123.6 96 57.3
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 9.1e-27 123.6 96 55.2
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.1e-27 123.6 101 56.4
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.2e-26 123.2 94 57.4
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.2e-26 123.2 87 63.2
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.6e-26 122.9 87 63.2
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 1.6e-26 122.9 89 60.7
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.0e-26 122.5 89 59.6
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 2.0e-26 122.5 96 58.3
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 2.7e-26 122.1 90 60.0
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 2.7e-26 122.1 87 57.5
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 3.5e-26 121.7 78 66.7
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 3.5e-26 121.7 96 56.2
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 4.5e-26 121.3 89 59.6
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 4.5e-26 121.3 96 58.3
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.9e-26 120.9 96 55.2
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 5.9e-26 120.9 87 59.8
FvH4_3g40410 Fragaria vesca HOM05D001129 ORTHO05D003814 7.7e-26 120.6 89 59.6
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 7.7e-26 120.6 87 59.8
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 7.7e-26 120.6 96 57.3
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 1.0e-25 120.2 87 60.9
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 1.0e-25 120.2 94 57.4
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 1.3e-25 119.8 96 55.2
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.3e-25 119.8 96 55.2
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 1.3e-25 119.8 87 60.9
BcaC07g42543 Brassica carinata HOM05D001129 ORTHO05D003814 1.7e-25 119.4 89 60.7
RcHm_v2.0_Chr1g0322391 Rosa chinensis HOM05D001129 ORTHO05D003814 1.7e-25 119.4 81 66.7
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 2.3e-25 119.0 89 57.3
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 2.3e-25 119.0 87 59.8
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 2.3e-25 119.0 89 57.3
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 2.3e-25 119.0 87 59.8
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 2.3e-25 119.0 89 57.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 2.3e-25 119.0 87 59.8
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 2.3e-25 119.0 89 57.3
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.9e-25 118.6 88 58.0
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 2.9e-25 118.6 96 53.1
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 5.0e-25 117.9 89 56.2
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 5.0e-25 117.9 96 57.3
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 6.5e-25 117.5 89 58.4
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 6.5e-25 117.5 96 55.2
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 6.5e-25 117.5 81 61.7
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 8.6e-25 117.1 96 55.2
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 1.1e-24 116.7 87 59.8
Actinidia11622 Actinidia chinensis HOM05D001129 ORTHO05D003814 1.9e-24 115.9 86 60.5
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.9e-24 115.9 96 56.2
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 1.9e-24 115.9 96 56.2
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.9e-24 115.9 96 56.2
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.9e-24 115.9 96 56.2
Oeu015569.1 Olea europaea HOM05D001129 ORTHO05D003814 2.5e-24 115.5 86 61.6
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 2.5e-24 115.5 96 53.1
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 3.3e-24 115.2 96 58.3
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 3.3e-24 115.2 96 54.2
RcHm_v2.0_Chr1g0333061 Rosa chinensis HOM05D001129 ORTHO05D003814 3.3e-24 115.2 81 61.7
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 5.5e-24 114.4 87 59.8
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 9.5e-24 113.6 87 57.5
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 9.5e-24 113.6 96 53.1
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 1.2e-23 113.2 96 54.2
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.2e-23 113.2 96 53.1
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 1.2e-23 113.2 96 54.2
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 1.6e-23 112.8 96 55.2
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 2.1e-23 112.5 96 54.2
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 2.8e-23 112.1 89 56.2
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 2.8e-23 112.1 96 54.2
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 4.7e-23 111.3 87 56.3
CAN.G3.33 Capsicum annuum HOM05D001129 ORTHO05D003814 4.7e-23 111.3 86 60.5
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.7e-23 111.3 88 56.8
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 6.1e-23 110.9 92 55.4
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 6.1e-23 110.9 86 55.8
HPP92_028209 Vanilla planifolia HOM05D001129 ORTHO05D003814 6.1e-23 110.9 86 55.8
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 2.3e-22 109.0 87 57.5
Gohir.D09G013866 Gossypium hirsutum HOM05D001129 ORTHO05D003814 3.0e-22 108.6 59 83.1
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 4.0e-22 108.2 87 56.3
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.2e-22 107.8 96 51.0
Mapoly0029s0118 Marchantia polymorpha HOM05D001129 ORTHO05D003814 8.9e-22 107.1 81 53.1
AagrBONN_evm.TU.Sc2ySwM_362.374 Anthoceros agrestis HOM05D001129 ORTHO05D003814 1.5e-21 106.3 81 50.6
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 2.6e-21 105.5 96 45.8
SEGI_13924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 4.4e-21 104.8 86 50.0
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 5.7e-21 104.4 87 54.0
FvH4_3g41040 Fragaria vesca HOM05D001129 ORTHO05D003814 1.3e-20 103.2 87 50.6
FAN11G1991 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.3e-20 103.2 87 50.6
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 1.3e-20 103.2 87 54.0
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 2.2e-20 102.4 63 71.4
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 4.9e-20 101.3 81 49.4
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 1.8e-19 99.4 87 50.6
FvH4_3g40413 Fragaria vesca HOM05D001129 ORTHO05D003814 2.0e-18 95.9 80 57.5
Gorai.011G096400 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.5e-18 95.1 50 88.0
CBR_g45246 Chara braunii HOM05D001129 ORTHO05D003814 1.2e-15 86.7 87 44.8
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 2.8e-15 85.5 87 44.8
COL.COLO4_06002 Corchorus olitorius HOM05D001129 ORTHO05D015438 4.7e-15 84.7 68 55.9
Pp3c1_4220 Physcomitrium patens HOM05D001129 ORTHO05D003814 1.0e-14 83.6 87 40.2
RcHm_v2.0_Chr6g0278561 Rosa chinensis HOM05D001129 ORTHO05D003814 6.4e-12 74.3 56 60.7
RcHm_v2.0_Chr2g0132461 Rosa chinensis HOM05D001129 ORTHO05D003814 4.1e-11 71.6 48 64.6
PRCOL_00003896 Prasinoderma coloniale HOM05D001129 ORTHO05D003814 3.5e-10 68.6 93 40.9
AL4G12820 Arabidopsis lyrata HOM05D001129 ORTHO05D080672 3.9e-09 65.1 123 34.1
Gohir.D03G054201 Gossypium hirsutum HOM05D001129 ORTHO05D015145 8.6e-09 63.9 39 71.8
RcHm_v2.0_Chr1g0335141 Rosa chinensis HOM05D001129 ORTHO05D003814 1.2e-07 60.1 37 73.0
CBR_g49619 Chara braunii HOM05D001129 ORTHO05D003814 6.2e-07 57.8 83 38.6


User provided reference genes

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