Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 5.2e-140 501.1 268 100.0
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.1e-137 493.4 268 98.5
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.9e-135 485.3 268 97.0
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 3.5e-96 355.5 272 75.0
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 5.6e-78 295.0 214 74.8
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 1.4e-76 290.4 269 63.9
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.6e-75 286.2 181 82.9
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 9.9e-75 284.3 234 67.5
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 2.2e-74 283.1 195 75.9
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 6.4e-74 281.6 224 67.4
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 1.9e-73 280.0 270 62.6
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 9.3e-73 277.7 248 67.3
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.2e-72 277.3 176 81.8
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 2.7e-72 276.2 281 59.4
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 3.5e-72 275.8 176 81.2
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 4.6e-72 275.4 198 71.2
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 7.9e-72 274.6 269 59.9
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.0e-71 274.2 241 70.1
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 1.0e-71 274.2 217 71.0
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 1.3e-71 273.9 274 59.9
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.8e-71 273.5 197 71.6
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 3.9e-71 272.3 221 68.3
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 1.1e-70 270.8 176 80.7
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 2.5e-70 269.6 176 77.3
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 3.3e-70 269.2 196 73.5
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 3.3e-70 269.2 266 58.3
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 7.4e-70 268.1 207 68.6
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 9.6e-70 267.7 228 64.0
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 2.1e-69 266.5 176 76.1
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 4.8e-69 265.4 272 56.6
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 6.2e-69 265.0 217 67.3
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.8e-68 263.5 274 58.8
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 4.0e-68 262.3 235 63.4
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 6.9e-68 261.5 276 56.5
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 9.0e-68 261.2 194 71.6
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.0e-67 260.0 276 56.9
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 2.6e-67 259.6 182 74.7
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.3e-66 257.3 179 74.3
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.7e-66 256.9 230 62.6
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 2.9e-66 256.1 179 76.0
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 2.9e-66 256.1 260 59.2
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 3.8e-66 255.8 264 58.3
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 6.5e-66 255.0 270 56.3
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 6.5e-66 255.0 225 63.6
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.1e-65 254.2 281 55.5
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.1e-65 254.2 270 55.9
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.4e-65 253.8 177 75.1
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.9e-65 253.4 260 58.1
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 3.2e-65 252.7 179 73.2
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 3.2e-65 252.7 184 72.8
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 5.5e-65 251.9 178 72.5
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 7.1e-65 251.5 178 72.5
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.6e-64 250.4 270 54.8
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 2.1e-64 250.0 179 73.2
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 2.1e-64 250.0 228 63.6
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 2.7e-64 249.6 207 65.7
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.7e-64 249.6 170 76.5
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 3.5e-64 249.2 180 74.4
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.5e-64 249.2 179 71.5
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 6.0e-64 248.4 180 72.2
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 1.3e-63 247.3 180 71.7
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.8e-63 246.9 180 72.8
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 3.0e-63 246.1 180 70.0
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 3.9e-63 245.7 180 70.0
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 3.9e-63 245.7 180 70.0
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 3.9e-63 245.7 180 70.0
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.1e-62 244.2 213 65.7
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 1.5e-62 243.8 284 53.9
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.5e-62 243.8 174 70.7
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 9.7e-62 241.1 168 73.2
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.3e-61 240.7 198 66.2
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.4e-60 237.3 224 61.6
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.1e-60 236.1 155 76.1
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.9e-60 235.0 167 71.3
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 1.2e-59 234.2 200 63.0
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.2e-59 234.2 167 70.7
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.5e-59 233.8 167 70.7
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 3.4e-59 232.6 165 70.9
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 8.5e-58 228.0 164 68.9
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.6e-56 223.8 146 76.7
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 2.3e-55 219.9 147 75.5
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 3.3e-54 216.1 236 53.0
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 1.3e-53 214.2 147 75.5
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 8.2e-53 211.5 146 71.2
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 5.9e-51 205.3 241 50.6
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.0e-50 204.5 154 66.9
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 6.5e-50 201.8 147 73.5
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.2e-48 197.6 147 67.3
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 2.1e-48 196.8 267 47.9
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 2.7e-48 196.4 160 65.0
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.8e-47 193.7 223 56.5
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.3e-45 185.3 165 60.6
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 3.5e-43 179.5 220 49.5
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 6.5e-42 175.3 121 73.6
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 5.5e-41 172.2 122 72.1
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 9.4e-41 171.4 210 49.0
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 8.0e-40 168.3 168 57.7
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 5.7e-38 162.2 201 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.2e-34 150.2 170 49.4
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.6e-32 144.1 103 70.9
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.5e-30 137.5 85 83.5
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 3.4e-30 136.3 125 63.2
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 5.7e-30 135.6 146 56.2
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 1.6e-27 127.5 146 55.5
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.6e-27 127.5 177 44.6
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 5.0e-26 122.5 84 72.6
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 2.6e-22 110.2 105 53.3
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 5.7e-22 109.0 85 65.9
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.7e-21 107.5 72 73.6
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 1.8e-20 104.0 187 39.0
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 9.1e-20 101.7 65 78.5
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.2e-19 101.3 106 55.7
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 2.7e-19 100.1 126 50.0
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 2.7e-19 100.1 205 36.6
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 1.1e-17 94.7 72 75.0
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 4.7e-16 89.4 56 80.4
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.5e-14 84.3 114 50.9
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 5.7e-14 82.4 65 60.0
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 7.5e-14 82.0 104 48.1
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 1.3e-10 71.2 85 44.7
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 1.3e-10 71.2 55 61.8
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.3e-09 66.6 43 69.8
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 2.8e-08 63.5 107 38.3


User provided reference genes

Program Settings