Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 5.2e-117 424.5 226 100.0
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.8e-116 420.2 226 99.1
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.3e-103 378.3 233 90.6
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 3.5e-81 305.4 231 74.5
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.8e-81 304.3 233 75.5
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.0e-80 303.9 233 75.1
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-80 303.5 232 76.3
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.9e-80 302.0 232 74.6
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 2.1e-70 269.6 233 68.7
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.4e-69 266.2 233 64.4
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 9.9e-68 260.8 235 65.5
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 1.1e-66 257.3 224 65.6
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 1.9e-66 256.5 233 65.2
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 7.1e-66 254.6 238 62.2
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 2.3e-64 249.6 234 63.2
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.0e-64 249.2 223 64.6
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 2.5e-63 246.1 230 62.6
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 3.3e-63 245.7 232 62.1
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.3e-62 243.8 225 63.1
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.8e-62 242.7 230 62.2
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 4.8e-62 241.9 227 64.3
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.1e-61 240.7 236 65.3
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.4e-61 240.4 234 64.1
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 3.1e-61 239.2 223 61.9
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 5.3e-61 238.4 239 60.3
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 6.9e-61 238.0 219 65.3
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 2.0e-60 236.5 231 61.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 3.4e-60 235.7 264 58.0
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 5.8e-60 235.0 230 63.5
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 7.6e-60 234.6 238 60.5
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.7e-59 233.4 211 62.6
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 2.2e-59 233.0 230 63.0
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.1e-58 230.7 222 61.7
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 5.5e-58 228.4 276 54.7
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 7.1e-58 228.0 234 60.3
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 2.1e-57 226.5 234 62.0
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 3.0e-56 222.6 234 57.7
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 6.7e-56 221.5 223 59.2
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.1e-55 220.7 219 59.8
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.5e-55 220.3 226 61.5
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.5e-55 220.3 219 58.9
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 4.3e-55 218.8 222 62.6
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 4.3e-55 218.8 226 61.1
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 4.3e-55 218.8 232 57.3
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 5.7e-55 218.4 230 59.6
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 3.7e-54 215.7 229 57.6
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 3.7e-54 215.7 223 60.5
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 4.8e-54 215.3 227 60.8
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 8.2e-54 214.5 220 60.9
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.1e-53 214.2 227 60.4
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 2.4e-53 213.0 232 56.5
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.1e-53 212.6 202 64.9
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 3.1e-53 212.6 226 60.2
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 4.1e-53 212.2 220 59.5
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 5.3e-53 211.8 227 60.8
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 2.0e-52 209.9 220 59.5
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 4.5e-52 208.8 206 60.2
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 5.8e-52 208.4 238 56.7
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.0e-51 207.6 220 58.6
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.0e-51 207.6 217 59.0
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.3e-51 207.2 259 53.7
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 2.2e-51 206.5 224 56.2
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.9e-51 206.1 213 61.0
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 2.9e-51 206.1 238 54.6
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 3.8e-51 205.7 226 56.6
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 3.8e-51 205.7 226 58.0
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 3.8e-51 205.7 226 57.1
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 6.5e-51 204.9 249 56.6
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.1e-50 204.1 220 57.7
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.1e-50 204.1 220 57.7
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.4e-50 203.8 223 57.4
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 2.5e-50 203.0 225 58.2
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 5.5e-50 201.8 224 56.7
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 7.2e-50 201.4 232 56.5
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 7.2e-50 201.4 227 56.4
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 9.3e-50 201.1 210 57.6
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.2e-49 200.7 224 55.8
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.2e-49 200.7 230 54.3
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.6e-49 200.3 221 56.1
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.6e-49 200.3 258 52.7
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 2.1e-49 199.9 221 58.4
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 4.6e-49 198.7 232 54.3
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.0e-48 197.6 213 56.8
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.3e-48 197.2 223 54.3
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 2.3e-48 196.4 223 58.7
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 3.9e-48 195.7 213 56.8
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 8.7e-48 194.5 228 56.1
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.1e-47 194.1 225 54.7
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.5e-47 193.7 215 55.3
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 4.3e-47 192.2 229 54.1
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 6.3e-46 188.3 232 51.3
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 1.8e-45 186.8 226 53.1
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 5.3e-45 185.3 217 56.7
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 6.9e-45 184.9 218 57.3
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.7e-43 180.3 221 51.6
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 6.5e-43 178.3 219 52.5
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.2e-42 175.6 264 45.5
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.2e-42 175.6 264 45.5
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 5.5e-42 175.3 205 57.6
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 1.2e-41 174.1 227 52.0
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 1.2e-41 174.1 227 52.0
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 1.2e-41 174.1 227 52.0
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 1.2e-41 174.1 215 52.6
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.1e-41 173.3 334 40.7
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.7e-41 172.9 217 53.0
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.7e-41 172.9 223 49.3
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 7.9e-41 171.4 187 59.9
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 7.9e-41 171.4 187 59.9
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.8e-40 170.2 229 50.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.8e-40 170.2 229 50.2
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 3.3e-39 166.0 222 49.1
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 2.8e-38 162.9 227 48.9
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 4.8e-38 162.2 226 50.9
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.4e-37 159.8 188 57.4
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 5.3e-37 158.7 230 49.6
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 6.9e-37 158.3 187 55.1
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 7.2e-34 148.3 236 47.5
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 9.4e-34 147.9 166 54.8
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.6e-33 147.1 214 47.7
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.1e-33 146.7 223 48.0
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 6.1e-33 145.2 223 47.5
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 6.1e-33 145.2 223 47.5
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 2.2e-30 136.7 166 57.2
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 2.0e-28 130.2 224 43.8
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.1e-26 124.4 156 55.8
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.9e-26 123.6 96 69.8
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 2.5e-26 123.2 129 61.2
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 9.4e-26 121.3 306 36.6
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.6e-25 120.6 211 41.7
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 2.3e-24 116.7 147 53.7
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 4.0e-24 115.9 208 44.2
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 3.1e-21 106.3 247 36.8
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 2.2e-19 100.1 141 53.9
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.2e-18 95.9 218 37.2
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 1.2e-15 87.8 162 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 4.8e-14 82.4 93 53.8
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 3.5e-12 76.3 79 60.8
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.5e-12 76.3 84 50.0
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.9e-11 73.2 45 80.0
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 3.8e-11 72.8 123 45.5
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.5e-11 72.0 45 80.0
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 4.7e-09 65.9 53 66.0
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 4.7e-09 65.9 53 66.0
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 6.1e-09 65.5 48 75.0
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 4.4e-07 59.3 77 48.1
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 8.3e-06 55.1 63 50.8
Lsat_1_v5_gn_2_102640 Lactuca sativa HOM05D004799 ORTHO05D005500 8.3e-06 55.1 56 58.9
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 8.3e-06 55.1 143 38.5


User provided reference genes

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