Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 9.5e-285 983.0 569 100.0
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-280 969.5 569 98.6
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.4e-280 967.2 569 90.7
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.5e-237 826.2 569 83.3
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 2.5e-237 825.5 568 76.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.6e-218 762.3 560 73.0
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.9e-218 761.1 560 73.6
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.0e-185 654.1 569 66.1
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 8.7e-161 571.2 573 57.4
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.2e-158 562.0 580 55.3
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 3.4e-157 559.3 549 56.6
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.7e-154 549.7 561 57.6
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.5e-152 543.9 576 53.6
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.1e-150 537.7 563 58.3
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 6.9e-150 535.0 582 52.7
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 4.5e-149 532.3 570 53.5
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 7.1e-147 525.0 577 51.6
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 7.9e-146 521.5 566 58.0
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.5e-144 517.3 566 50.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 3.3e-144 516.2 574 51.7
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 5.6e-144 515.4 562 57.1
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.4e-142 510.0 580 53.4
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.4e-141 506.1 567 59.8
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.8e-141 505.4 392 71.2
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 5.8e-141 505.4 638 48.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.3e-137 494.2 577 51.3
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 8.7e-137 491.5 538 51.7
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 4.8e-135 485.7 576 51.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.2e-135 485.0 550 51.8
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.8e-134 483.8 573 49.0
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.2e-133 481.1 566 49.8
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.5e-133 480.7 520 52.3
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.2e-131 472.6 571 51.3
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.3e-131 471.5 574 50.0
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.2e-130 471.1 565 48.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.6e-130 470.7 560 48.0
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.6e-130 470.7 560 48.0
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 2.7e-130 469.9 567 51.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 7.9e-130 468.4 571 51.1
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.0e-129 468.0 570 51.1
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.3e-129 467.6 565 48.0
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.3e-129 467.6 595 47.4
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.7e-129 465.3 571 50.6
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.9e-128 463.8 566 48.8
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 4.3e-128 462.6 567 49.9
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.3e-127 461.1 568 48.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-127 460.7 579 49.1
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.6e-127 460.7 572 52.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-126 458.0 577 48.7
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.1e-126 458.0 573 47.5
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.1e-126 458.0 545 48.8
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.1e-126 456.4 567 48.7
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 5.3e-126 455.7 580 54.8
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.2e-125 454.5 560 45.7
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.5e-125 454.1 545 55.6
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 7.6e-125 451.8 574 48.8
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.2e-124 450.3 568 47.2
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 3.8e-124 449.5 539 47.5
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 5.5e-123 445.7 565 44.4
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.6e-122 443.0 570 51.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 3.6e-122 443.0 546 46.3
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.3e-121 440.3 568 46.1
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 8.8e-121 438.3 536 47.2
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 8.8e-121 438.3 589 46.2
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 5.7e-120 435.6 588 47.1
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 8.2e-119 431.8 538 46.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.4e-118 431.0 562 46.4
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.2e-117 427.9 580 46.7
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 7.7e-117 425.2 588 43.4
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.0e-116 424.9 544 45.4
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 7.2e-115 418.7 560 44.6
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 7.2e-115 418.7 572 43.4
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 7.2e-115 418.7 555 45.0
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.6e-114 416.4 556 44.2
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 7.9e-114 415.2 503 55.1
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 2.3e-113 413.7 519 44.7
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 6.7e-113 412.1 545 46.4
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.5e-112 411.0 538 44.6
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.5e-112 411.0 565 43.9
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 2.0e-112 410.6 534 42.5
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.6e-112 410.2 546 44.5
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 9.7e-112 408.3 539 44.3
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 4.1e-110 402.9 546 44.3
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.2e-109 401.4 454 48.9
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.0e-108 398.3 577 41.4
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.0e-108 398.3 457 55.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 6.5e-108 395.6 575 49.6
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 8.5e-108 395.2 575 49.4
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 8.5e-108 395.2 563 42.5
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.7e-106 390.2 558 49.8
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.3e-105 387.1 538 42.4
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 3.9e-105 386.3 545 42.0
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 6.7e-105 385.6 545 42.0
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 2.0e-104 384.0 577 42.5
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 2.6e-104 383.6 587 43.8
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 5.7e-104 382.5 534 42.9
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-103 381.3 546 45.6
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.8e-103 380.2 560 44.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 3.7e-103 379.8 545 41.5
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 6.3e-103 379.0 541 44.2
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.8e-102 377.5 550 41.3
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.0e-100 371.7 540 43.5
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.7e-100 370.9 545 40.7
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.7e-100 370.9 554 40.6
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.7e-100 370.9 551 41.7
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 2.9e-100 370.2 545 40.9
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 3.8e-100 369.8 545 40.7
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 3.2e-99 366.7 539 40.1
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.4e-97 361.3 540 40.2
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.3e-95 352.4 428 45.1
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.5e-91 339.3 266 67.3
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 4.7e-90 336.3 265 66.0
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.8e-89 334.3 563 39.4
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.3e-89 334.0 538 38.3
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.0e-89 333.2 363 50.7
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 2.6e-88 330.5 534 39.7
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.7e-87 327.8 564 37.8
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.7e-87 326.6 427 45.0
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 9.1e-86 322.0 455 44.6
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.0e-85 320.9 459 44.9
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 4.2e-83 313.2 459 44.7
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 5.5e-83 312.8 541 37.2
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.2e-82 311.6 559 37.4
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 6.6e-76 289.3 470 41.3
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.3e-73 280.8 369 46.1
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 4.3e-67 260.0 536 36.2
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.8e-64 249.6 540 38.1
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.1e-62 245.4 250 55.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 7.3e-59 232.6 390 35.9
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.7e-58 229.9 311 43.7
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.0e-53 213.0 430 35.3
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.2e-46 190.7 248 48.0
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.6e-42 178.3 366 39.6
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 7.6e-40 169.5 248 38.7
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.4e-39 166.4 152 61.8
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.4e-38 163.3 152 60.5
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-37 162.2 249 40.2
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 9.6e-35 152.5 147 57.8
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.3e-34 152.1 344 31.1
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-33 149.1 161 47.8
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 9.9e-32 142.5 157 54.1
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.1e-30 136.3 145 49.0
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 3.0e-28 131.0 549 24.0
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 3.3e-27 127.5 473 25.2
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.8e-26 123.6 100 65.0
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.3e-25 120.2 138 41.3
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 2.6e-24 117.9 527 23.7
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.9e-23 113.6 116 51.7
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.2e-22 110.5 184 36.4
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.2e-21 109.0 548 21.9
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.5e-21 107.5 164 37.8
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 6.0e-21 106.7 65 83.1
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.3e-20 105.5 105 54.3
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.0e-20 104.4 126 43.7
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.9e-19 101.7 92 55.4
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.9e-19 101.7 163 41.1
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.3e-19 100.9 173 32.9
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 3.3e-19 100.9 162 39.5
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.8e-18 97.8 536 24.4
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 2.4e-17 94.7 119 39.5
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.0e-16 91.7 134 38.8
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 7.6e-16 89.7 73 60.3
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.6e-16 89.7 70 68.6
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.7e-15 88.6 123 40.7
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 4.6e-13 80.5 77 57.1
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.6e-13 80.5 84 51.2
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-12 78.2 66 57.6
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-12 78.2 66 57.6
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 6.7e-12 76.6 565 21.6
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 1.1e-11 75.9 203 26.6
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.6e-10 72.0 77 45.5
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.2e-10 71.6 135 35.6
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.2e-10 71.6 64 59.4
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-09 68.9 72 44.4
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.7e-08 63.2 111 35.1
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.7e-07 62.0 68 51.5
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.5e-07 59.7 55 54.5
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.2e-06 57.4 116 37.1
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 9.4e-06 56.2 133 32.3


User provided reference genes

Program Settings