Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.9e-41 171.4 84 100.0
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.5e-40 169.1 84 98.8
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.2e-26 122.9 75 78.7
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.2e-26 122.9 75 78.7
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.2e-26 122.9 75 78.7
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 7.8e-26 120.2 74 77.0
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 1.0e-25 119.8 75 72.0
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 1.0e-25 119.8 74 75.7
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 8.6e-25 116.7 82 61.0
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 1.1e-24 116.3 68 79.4
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 1.5e-24 115.9 81 64.2
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 3.3e-24 114.8 73 72.6
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 5.6e-24 114.0 74 70.3
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.6e-23 112.5 73 69.9
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 2.1e-23 112.1 71 70.4
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 3.6e-23 111.3 75 68.0
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 4.7e-23 110.9 78 64.1
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 1.1e-22 109.8 76 63.2
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 1.4e-22 109.4 75 64.0
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 1.8e-22 109.0 77 63.6
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.8e-22 109.0 77 63.6
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 2.3e-22 108.6 78 62.8
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 2.3e-22 108.6 75 66.7
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 2.3e-22 108.6 85 58.8
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.1e-22 108.2 87 57.5
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 4.0e-22 107.8 73 64.4
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 5.2e-22 107.5 73 64.4
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 6.8e-22 107.1 82 59.8
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 1.2e-21 106.3 73 64.4
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 1.2e-21 106.3 75 64.0
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 2.6e-21 105.1 73 64.4
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 2.6e-21 105.1 75 62.7
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 3.4e-21 104.8 78 62.8
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 3.4e-21 104.8 71 64.8
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 3.4e-21 104.8 71 64.8
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 3.4e-21 104.8 71 64.8
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 3.4e-21 104.8 71 64.8
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 4.4e-21 104.4 68 69.1
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 7.5e-21 103.6 69 65.2
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 7.5e-21 103.6 69 65.2
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.3e-20 102.8 73 63.0
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.3e-20 102.8 75 62.7
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.3e-20 102.8 75 62.7
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 2.2e-20 102.1 70 64.3
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 2.9e-20 101.7 74 64.9
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 6.4e-20 100.5 84 57.1
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 6.4e-20 100.5 71 66.2
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 8.3e-20 100.1 77 62.3
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 8.3e-20 100.1 80 57.5
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.1e-19 99.8 75 60.0
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 1.4e-19 99.4 76 63.2
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 2.4e-19 98.6 69 60.9
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 3.2e-19 98.2 71 59.2
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 3.2e-19 98.2 75 61.3
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 3.2e-19 98.2 73 61.6
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 3.2e-19 98.2 69 60.9
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 4.1e-19 97.8 70 64.3
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 4.1e-19 97.8 67 64.2
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 4.1e-19 97.8 68 63.2
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-19 97.8 72 63.9
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 4.1e-19 97.8 69 63.8
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 7.1e-19 97.1 71 66.2
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 7.1e-19 97.1 68 63.2
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 9.2e-19 96.7 70 62.9
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 9.2e-19 96.7 66 65.2
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 9.2e-19 96.7 73 63.0
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.2e-18 96.3 70 62.9
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 1.6e-18 95.9 71 59.2
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 1.6e-18 95.9 71 59.2
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.6e-18 95.9 76 56.6
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 1.6e-18 95.9 68 64.7
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 1.6e-18 95.9 68 61.8
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 1.6e-18 95.9 71 62.0
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 2.1e-18 95.5 71 60.6
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 2.1e-18 95.5 74 58.1
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 2.1e-18 95.5 68 64.7
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 2.1e-18 95.5 73 58.9
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 2.1e-18 95.5 68 61.8
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 2.7e-18 95.1 71 62.0
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 3.5e-18 94.7 76 55.3
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 6.0e-18 94.0 71 62.0
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 6.0e-18 94.0 76 55.3
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 7.8e-18 93.6 75 57.3
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.3e-17 92.8 73 57.5
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 1.3e-17 92.8 73 57.5
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 2.3e-17 92.0 73 58.9
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.3e-17 92.0 77 57.1
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 3.0e-17 91.7 68 58.8
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 3.0e-17 91.7 75 56.0
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 3.9e-17 91.3 75 56.0
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 3.9e-17 91.3 75 56.0
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 5.1e-17 90.9 70 61.4
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 5.1e-17 90.9 71 57.7
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 6.6e-17 90.5 76 52.6
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 1.9e-16 89.0 76 52.6
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 1.9e-16 89.0 73 56.2
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 3.3e-16 88.2 68 60.3
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 7.3e-16 87.0 71 53.5
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 7.3e-16 87.0 73 54.8
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 1.2e-15 86.3 72 55.6
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 1.6e-15 85.9 68 55.9
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.1e-15 85.5 68 55.9
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 1.4e-14 82.8 71 52.1
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 3.4e-13 78.2 71 49.3
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 7.1e-11 70.5 57 57.9
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 7.1e-11 70.5 70 52.9
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 1.2e-10 69.7 69 44.9
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 1.6e-10 69.3 79 46.8
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 2.1e-10 68.9 70 51.4
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 2.1e-10 68.9 70 51.4
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 2.1e-10 68.9 69 43.5
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 2.7e-10 68.6 61 54.1
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 7.8e-10 67.0 70 50.0
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 7.8e-10 67.0 157 30.6
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 7.8e-10 67.0 52 57.7
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 1.7e-09 65.9 69 44.9
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 1.1e-08 63.2 36 75.0
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 3.6e-07 58.2 36 69.4
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 4.7e-07 57.8 63 41.3
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 1.8e-06 55.8 65 40.0
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 3.1e-06 55.1 36 63.9


User provided reference genes

Program Settings