Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 3436.7 1854 100.0
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 3375.1 1854 96.8
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2882.8 1856 83.8
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2832.7 1895 81.7
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2708.7 1907 77.1
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2676.0 1897 77.1
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2652.5 1899 76.9
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2620.9 1890 74.7
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2597.4 1906 74.8
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2587.4 1903 73.6
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2581.2 1891 74.8
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2573.1 1895 74.2
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2566.6 1884 74.3
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2563.5 1865 74.5
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2533.4 1900 72.9
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2528.4 1898 72.4
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2527.7 1892 73.3
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2520.7 1898 72.0
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2512.6 1900 71.5
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2501.9 1894 72.7
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2499.9 1913 69.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2498.8 1896 72.7
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2495.3 1982 70.6
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2487.6 1902 72.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2485.3 1899 72.5
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2477.2 1897 71.3
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2469.9 1908 71.5
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2466.8 1915 70.9
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2463.0 1933 70.7
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2456.0 2108 65.4
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2451.4 1898 70.9
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2444.1 1889 70.9
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2438.3 1886 70.5
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2437.5 1896 70.6
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2427.5 1896 70.3
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2418.7 1895 69.6
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2412.1 1858 69.6
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2405.6 2097 67.0
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2401.7 1896 69.6
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2397.5 1896 70.9
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2397.1 1893 68.3
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2395.5 1734 75.3
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2389.4 1886 67.4
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2378.2 2230 61.2
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2370.9 1952 67.6
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2350.9 1704 73.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2338.5 1865 68.3
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2330.1 1886 68.1
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2321.6 1892 67.7
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2318.9 1893 67.2
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2318.9 1877 70.1
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2313.1 1895 68.2
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2307.3 1854 68.4
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2306.9 1895 68.3
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2306.6 1877 69.6
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2305.8 1897 67.5
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2301.2 1739 73.1
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2293.5 1862 69.0
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2288.5 1891 66.7
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2280.8 1848 68.0
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2276.5 1859 68.6
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2274.2 1862 67.8
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2271.9 1887 67.7
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2270.7 1861 68.5
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2265.3 1863 67.5
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2265.0 1879 68.8
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2260.3 1891 66.0
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2254.6 1877 68.6
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2251.5 1873 68.8
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2245.3 1862 68.0
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2243.8 1867 68.5
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2242.6 1883 68.2
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2240.3 1882 68.1
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2239.2 1867 68.6
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2226.4 1971 64.7
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2221.4 1861 66.9
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2210.3 1869 66.1
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2206.0 1838 67.8
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2196.4 1877 67.0
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2180.6 1934 64.1
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2169.8 1763 68.3
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2162.9 1791 67.7
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2161.0 1960 61.6
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2149.0 1913 65.1
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 2148.6 1865 66.0
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2062.0 1898 61.5
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 2015.0 1374 75.3
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1979.1 1517 72.7
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1933.3 1501 70.4
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1849.3 1841 57.1
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1837.8 984 95.3
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1814.7 1991 54.8
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1778.1 1983 54.4
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1721.8 1742 56.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1623.2 1875 52.6
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1586.6 1875 53.4
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1542.7 1218 73.6
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1436.4 1271 64.5
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1424.5 1296 64.4
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1419.4 1102 70.7
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1418.7 1468 59.1
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1390.9 829 97.1
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1332.4 1199 62.5
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1223.0 1094 67.2
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1204.9 849 72.9
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1189.9 941 68.9
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 6.7e-303 1045.0 1133 58.3
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 6.7e-303 1045.0 1355 45.2
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.5e-299 1033.9 674 79.5
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.3e-285 987.6 692 75.9
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.1e-233 815.1 956 56.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 8.0e-232 808.9 1111 46.4
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 3.3e-217 760.4 1321 37.3
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 4.3e-217 760.0 448 88.2
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 1.4e-164 585.5 374 79.7
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 2.5e-161 574.7 1245 33.5
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.2e-150 539.3 366 75.1
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.3e-144 519.2 367 72.2
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.7e-139 500.7 367 71.1
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.4e-111 408.7 499 51.1
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 4.0e-106 391.3 300 67.7
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 9.5e-100 370.2 299 66.9
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.6e-94 352.8 522 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.5e-92 346.3 214 79.0
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.1e-91 342.4 237 72.2
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.4e-88 330.5 198 82.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.1e-87 327.4 260 65.4
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 6.0e-86 324.3 1125 26.8
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.7e-85 322.8 569 44.6
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 5.1e-85 321.2 1347 25.4
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 1.9e-68 266.2 264 56.8
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 2.7e-62 245.7 226 61.5
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 3.0e-61 242.3 170 71.8
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.5e-57 228.4 505 34.7
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.1e-55 223.8 245 54.7
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.3e-52 212.2 237 54.0
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 3.7e-51 208.8 190 60.0
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 3.4e-49 202.2 176 61.9
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 9.7e-44 184.1 223 51.1
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 9.7e-44 184.1 163 61.3
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 4.2e-39 168.7 379 38.5
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.7e-38 166.0 106 72.6
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.0e-37 162.5 89 84.3
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.5e-36 160.2 148 62.2
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.2e-29 135.2 116 65.5
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 6.7e-29 134.8 87 73.6
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-28 134.0 108 70.4
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 5.7e-28 131.7 75 92.0
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.2e-27 129.8 146 59.6
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 6.3e-27 128.3 141 54.6
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.6e-25 123.6 69 92.8
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 3.2e-23 115.9 61 93.4
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 6.1e-22 111.7 81 75.3
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 6.1e-22 111.7 73 78.1
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 4.0e-21 109.0 75 77.3
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 7.0e-18 98.2 107 55.1
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 5.9e-17 95.1 58 81.0
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 5.9e-17 95.1 58 81.0
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.9e-16 92.8 82 58.5
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 5.0e-16 92.0 58 79.3
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 1.1e-15 90.9 128 49.2
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.6e-14 87.0 86 55.8
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 2.1e-14 86.7 69 62.3
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.7e-14 85.5 103 48.5
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 1.0e-13 84.3 41 95.1
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 8.8e-13 81.3 93 48.4
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.6e-12 79.7 36 97.2
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 5.7e-12 78.6 50 82.0
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.7e-11 75.9 48 72.9
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 1.1e-10 74.3 77 57.1
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 4.1e-10 72.4 77 53.2
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.0e-08 67.8 111 37.8
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-06 60.8 59 55.9


User provided reference genes

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