Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 1.5e-156 557.4 414 100.0
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 3.7e-155 552.7 414 99.3
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 1.9e-148 530.4 411 97.6
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 7.4e-124 448.7 409 88.3
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 1.0e-117 428.3 405 86.9
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 5.3e-114 416.0 409 84.4
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 1.7e-96 357.8 404 77.5
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 2.5e-95 354.0 407 76.9
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 4.0e-93 346.7 404 76.5
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 9.8e-92 342.0 400 76.5
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 2.2e-91 340.9 423 73.8
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 2.8e-91 340.5 405 76.8
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 8.3e-91 339.0 406 76.1
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 1.4e-90 338.2 404 77.0
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 5.4e-90 336.3 425 73.2
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 1.2e-89 335.1 424 73.6
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 1.6e-89 334.7 407 75.2
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 2.0e-89 334.3 425 72.7
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 2.7e-89 334.0 427 72.8
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 1.3e-88 331.6 405 76.3
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 1.7e-88 331.3 395 75.2
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 1.7e-88 331.3 419 73.0
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 2.3e-88 330.9 419 73.5
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 8.6e-88 328.9 399 75.4
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 8.6e-88 328.9 415 53.0
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.1e-87 328.6 407 73.2
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 1.1e-87 328.6 400 65.0
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 2.5e-87 327.4 399 74.7
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 3.3e-87 327.0 414 72.9
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 4.3e-87 326.6 407 73.0
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 5.6e-87 326.2 417 73.4
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 5.6e-87 326.2 401 74.8
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 1.6e-86 324.7 404 73.0
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 1.6e-86 324.7 404 73.0
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 1.6e-86 324.7 404 73.0
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 2.8e-86 323.9 414 72.7
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 4.7e-86 323.2 404 73.0
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 4.7e-86 323.2 420 71.9
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 1.0e-85 322.0 404 74.3
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.8e-85 321.2 412 71.6
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 3.1e-85 320.5 403 73.9
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 2.6e-84 317.4 417 72.4
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 5.8e-84 316.2 412 71.1
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 1.1e-82 312.0 402 72.4
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 1.9e-82 311.2 411 70.3
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 3.2e-82 310.5 420 70.5
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 3.2e-82 310.5 403 73.2
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 7.0e-82 309.3 415 71.1
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 7.0e-82 309.3 399 72.9
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 1.6e-81 308.1 407 73.7
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 6.6e-80 302.8 415 70.4
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 1.5e-79 301.6 399 72.2
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.9e-79 301.2 399 70.9
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 5.6e-79 299.7 405 70.9
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 5.6e-79 299.7 399 72.4
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 5.6e-79 299.7 416 69.5
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 9.5e-79 298.9 419 68.5
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 1.6e-78 298.1 414 70.0
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 2.1e-78 297.7 412 68.9
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 8.1e-78 295.8 412 68.7
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 8.1e-78 295.8 409 68.9
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 2.3e-77 294.3 414 70.0
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 5.2e-77 293.1 415 67.7
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 5.2e-77 293.1 415 67.7
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 2.6e-76 290.8 417 67.1
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 2.6e-76 290.8 411 70.1
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 3.4e-76 290.4 405 70.1
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 3.4e-76 290.4 405 69.9
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 4.4e-76 290.0 419 67.1
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 4.4e-76 290.0 400 70.0
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 7.5e-76 289.3 405 68.6
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 1.3e-75 288.5 418 68.2
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 3.7e-75 287.0 403 68.7
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 3.2e-74 283.9 403 68.2
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 5.4e-74 283.1 414 68.1
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 1.7e-72 278.1 410 69.8
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 2.3e-72 277.7 411 66.4
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 8.6e-72 275.8 410 69.3
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 1.9e-71 274.6 409 65.3
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 2.1e-70 271.2 419 65.4
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 1.2e-68 265.4 397 67.8
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 9.9e-68 262.3 493 48.9
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 3.7e-67 260.4 235 59.1
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 9.2e-66 255.8 383 65.3
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.7e-64 251.5 231 58.0
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 1.2e-62 245.4 415 48.7
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 6.8e-61 239.6 397 65.0
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 3.9e-56 223.8 190 61.6
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 2.9e-51 207.6 402 60.2
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 1.7e-43 181.8 402 59.7
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.7e-35 155.2 228 43.4
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 1.1e-34 152.5 262 78.2
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 1.2e-33 149.1 131 56.5
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 8.7e-24 116.3 66 78.8
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 1.5e-23 115.5 398 53.3
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 1.9e-23 115.2 66 77.3
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 9.7e-23 112.8 66 77.3
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 6.3e-22 110.2 66 69.7
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.1e-21 109.4 66 72.7
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.4e-21 108.2 66 68.2
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 6.9e-21 106.7 66 74.2
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 9.0e-21 106.3 65 67.7
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 1.3e-19 102.4 397 53.1
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 1.1e-18 99.4 66 66.7
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 6.7e-08 63.5 31 80.6


User provided reference genes

Program Settings