Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.0e-103 379.0 184 100.0
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.3e-97 359.8 204 88.2
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.9e-94 348.6 204 85.3
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.5e-90 334.0 192 87.5
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.8e-90 333.6 177 94.4
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.2e-89 332.4 192 87.5
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.9e-89 332.0 192 87.5
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.2e-88 328.6 193 86.0
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.0e-86 323.6 193 84.5
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-86 323.2 193 85.0
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.0e-86 321.2 192 84.9
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 8.9e-75 283.9 193 73.6
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.9e-72 276.2 191 73.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.3e-70 270.0 193 71.0
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.2e-67 258.1 173 76.9
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 5.1e-62 241.5 193 61.1
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 6.2e-60 234.6 195 59.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 9.9e-58 227.3 193 58.5
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.9e-57 225.7 189 59.3
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 4.9e-57 224.9 194 57.7
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 2.4e-56 222.6 193 57.5
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 9.3e-56 220.7 195 58.5
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 4.6e-55 218.4 192 57.8
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.0e-54 217.2 188 58.5
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 2.3e-54 216.1 196 56.1
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 3.9e-54 215.3 194 55.2
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 8.7e-54 214.2 193 57.5
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.5e-53 212.6 193 57.0
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.3e-53 212.2 182 59.3
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 4.3e-53 211.8 193 53.9
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 9.6e-53 210.7 186 57.5
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 2.8e-52 209.1 193 53.4
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 2.8e-52 209.1 193 54.9
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 4.8e-52 208.4 187 54.0
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 4.8e-52 208.4 203 53.2
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 6.2e-52 208.0 199 53.8
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 6.2e-52 208.0 195 56.9
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 6.2e-52 208.0 195 54.4
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 1.1e-51 207.2 202 52.0
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.1e-51 205.7 198 52.0
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.0e-51 205.3 205 54.1
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.0e-51 205.3 205 54.1
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 5.3e-51 204.9 187 53.5
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 2.0e-50 203.0 185 56.2
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.0e-50 203.0 204 53.4
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.0e-50 203.0 198 53.5
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 5.8e-50 201.4 197 53.3
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 7.6e-50 201.1 184 51.6
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 7.6e-50 201.1 152 62.5
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.3e-49 200.3 152 63.2
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.2e-49 199.5 193 53.4
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 2.9e-49 199.1 152 63.2
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 4.9e-49 198.4 153 63.4
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.1e-48 197.2 161 58.4
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.1e-48 197.2 199 50.8
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.4e-48 196.8 188 51.1
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.9e-48 196.4 152 59.9
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 4.2e-48 195.3 191 48.7
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.6e-47 193.4 189 51.3
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 2.1e-47 193.0 187 51.3
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 4.6e-47 191.8 153 60.1
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 4.6e-47 191.8 153 60.1
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 7.9e-47 191.0 153 62.7
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.0e-46 190.7 153 60.1
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.3e-46 190.3 152 60.5
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.3e-46 190.3 153 59.5
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.8e-46 189.9 153 60.1
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.8e-46 189.9 153 60.1
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.8e-46 189.9 153 60.1
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.8e-46 189.9 153 60.1
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 1.8e-46 189.9 191 51.8
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 1.8e-46 189.9 155 59.4
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 2.3e-46 189.5 153 61.4
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 2.3e-46 189.5 153 59.5
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 3.9e-46 188.7 189 49.2
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 8.7e-46 187.6 153 57.5
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 8.7e-46 187.6 153 59.5
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 8.7e-46 187.6 194 51.5
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.7e-46 187.6 123 79.7
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.5e-45 186.8 121 81.0
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.9e-45 186.4 189 47.6
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 2.5e-45 186.0 153 58.8
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.5e-45 186.0 189 48.1
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 3.3e-45 185.7 186 47.8
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 5.6e-45 184.9 190 53.7
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.6e-44 183.3 193 52.3
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 2.1e-44 183.0 155 58.7
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 2.1e-44 183.0 155 58.7
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.8e-44 182.6 150 60.7
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 4.0e-43 178.7 156 58.3
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 5.3e-43 178.3 194 48.5
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 9.0e-43 177.6 183 48.1
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 7.6e-42 174.5 198 50.5
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.2e-40 168.7 96 88.5
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 7.1e-40 167.9 193 50.3
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 7.9e-39 164.5 138 58.7
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 1.0e-38 164.1 182 47.8
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 3.0e-38 162.5 184 46.2
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 3.7e-36 155.6 154 51.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.4e-35 152.9 165 47.9
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 4.1e-35 152.1 208 43.8
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 3.4e-34 149.1 197 45.7
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.4e-32 143.7 169 50.3
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 4.3e-29 132.1 156 42.9
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 3.7e-28 129.0 152 45.4
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 3.7e-28 129.0 125 55.2
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 3.7e-28 129.0 160 43.1
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 2.4e-27 126.3 185 41.1
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 1.2e-26 124.0 166 41.0
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.5e-26 123.6 174 42.5
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 2.6e-26 122.9 162 42.0
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.4e-24 117.1 166 41.6
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.2e-23 114.0 84 66.7
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 3.7e-20 102.4 90 55.6
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 6.9e-19 98.2 157 41.4
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.2e-18 97.4 88 53.4
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.5e-18 97.1 76 59.2
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.0e-14 84.3 111 42.3
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.2e-12 76.6 38 97.4
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.6e-10 69.7 153 34.0
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 2.2e-09 66.6 167 29.9
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 2.7e-07 59.7 57 47.4
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 2.7e-07 59.7 57 47.4
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 6.7e-06 55.1 69 43.5
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 6.7e-06 55.1 137 29.9
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 6.7e-06 55.1 39 61.5


User provided reference genes

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