Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.3e-101 371.7 184 100.0
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.9e-81 304.7 206 78.2
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.9e-80 302.8 206 77.7
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.2e-80 302.0 193 81.9
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.4e-80 301.2 192 82.3
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-79 299.7 206 76.7
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.5e-79 298.5 193 80.8
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.3e-78 296.6 192 80.7
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.7e-78 296.2 192 80.2
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.5e-77 293.1 192 80.2
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.1e-67 260.4 206 66.0
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 2.4e-67 259.2 204 66.2
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 3.1e-67 258.8 207 67.1
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.5e-66 256.5 173 76.9
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.6e-66 254.2 192 72.4
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 3.1e-59 232.3 202 57.9
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 3.5e-55 218.8 201 57.7
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 2.3e-54 216.1 206 54.4
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 2.3e-54 216.1 202 55.0
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 3.9e-54 215.3 206 54.9
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 5.1e-54 214.9 206 55.8
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.5e-53 213.4 206 54.9
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 7.3e-53 211.1 206 54.9
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 9.6e-53 210.7 204 55.9
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 9.6e-53 210.7 195 56.9
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 2.1e-52 209.5 203 54.2
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 8.1e-52 207.6 200 52.5
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.4e-51 206.1 218 52.8
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.4e-51 206.1 218 52.8
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.1e-51 205.7 217 52.1
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 5.3e-51 204.9 202 54.0
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 6.9e-51 204.5 200 52.5
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 9.0e-51 204.1 203 52.2
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 2.0e-50 203.0 208 51.9
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 4.5e-50 201.8 194 56.2
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 5.8e-50 201.4 213 51.2
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.4e-48 196.8 186 54.8
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 9.3e-48 194.1 195 50.3
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.6e-47 193.4 182 55.5
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 4.6e-47 191.8 206 51.0
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.0e-46 190.7 195 49.7
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.0e-46 190.7 201 49.8
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 3.9e-46 188.7 204 50.0
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 5.1e-46 188.3 206 48.5
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 2.5e-45 186.0 195 51.3
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 4.3e-45 185.3 208 47.6
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 4.3e-45 185.3 195 51.3
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 7.4e-45 184.5 200 47.0
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 7.4e-45 184.5 196 48.0
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 7.4e-45 184.5 207 48.3
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 9.6e-45 184.1 199 49.7
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 1.3e-44 183.7 195 50.8
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.6e-44 183.3 203 49.3
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 2.8e-44 182.6 219 47.5
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 2.8e-44 182.6 194 50.0
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 4.8e-44 181.8 185 52.4
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 6.2e-44 181.4 207 49.3
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 6.2e-44 181.4 198 47.0
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 6.2e-44 181.4 203 49.3
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.8e-43 179.9 216 46.8
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.8e-43 179.9 195 48.7
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.8e-43 179.9 202 48.0
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.8e-43 179.9 202 48.0
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.4e-43 179.5 191 51.8
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.4e-43 179.5 193 49.2
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 3.1e-43 179.1 218 45.4
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 9.0e-43 177.6 186 47.8
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 1.2e-42 177.2 206 47.1
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.5e-42 176.8 195 47.2
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 2.0e-42 176.4 202 48.5
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.5e-42 175.3 216 45.4
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.5e-42 175.3 216 45.4
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.5e-42 175.3 216 45.4
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.5e-42 175.3 216 45.4
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 1.0e-41 174.1 202 47.5
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.0e-41 174.1 194 46.9
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.3e-41 173.7 206 46.1
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 2.9e-41 172.6 187 48.1
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 4.9e-41 171.8 204 48.0
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 4.9e-41 171.8 204 48.0
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 4.9e-41 171.8 179 48.6
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 4.9e-41 171.8 197 46.7
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.5e-41 171.4 194 45.9
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 8.4e-41 171.0 194 45.4
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 8.4e-41 171.0 194 47.9
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.1e-40 170.6 202 47.0
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 2.5e-40 169.5 204 45.6
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 2.5e-40 169.5 187 48.1
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 9.3e-40 167.5 183 50.8
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.6e-39 166.8 202 46.0
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.7e-39 166.0 128 61.7
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 5.7e-37 158.3 191 46.6
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 9.6e-37 157.5 123 71.5
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 9.6e-37 157.5 191 46.6
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 6.2e-36 154.8 126 61.9
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.4e-35 153.7 207 45.4
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.2e-34 150.6 194 45.9
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.8e-34 148.3 121 69.4
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 2.9e-33 146.0 200 45.5
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.8e-30 136.7 170 47.1
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 3.9e-30 135.6 206 43.2
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.9e-29 133.3 183 42.1
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.3e-28 130.6 186 39.8
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 2.4e-27 126.3 134 48.5
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.9e-27 124.8 108 66.7
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 9.0e-27 124.4 189 39.7
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 7.7e-26 121.3 196 39.3
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 2.3e-22 109.8 97 54.6
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 2.3e-22 109.8 86 61.6
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 8.8e-22 107.8 184 35.9
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.0e-21 106.7 100 52.0
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 5.7e-21 105.1 111 47.7
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.7e-20 103.6 119 47.1
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 4.8e-20 102.1 111 47.7
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 5.0e-17 92.0 118 41.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.2e-15 87.4 133 44.4
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 3.9e-14 82.4 114 43.9
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 7.4e-13 78.2 106 41.5
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.7e-12 77.0 39 94.9
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 7.0e-11 71.6 118 36.4
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.5e-08 63.9 119 37.8
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 4.0e-06 55.8 69 44.9
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 6.7e-06 55.1 39 61.5


User provided reference genes

Program Settings