Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G044200 Gossypium raimondii HOM05D006687 ORTHO05D008379 4.7e-241 837.4 414 100.0
Gohir.D02G039900 Gossypium hirsutum HOM05D006687 ORTHO05D008379 1.4e-240 835.9 414 99.8
Gohir.A02G033400 Gossypium hirsutum HOM05D006687 ORTHO05D008379 3.7e-238 827.8 414 98.3
Thecc.04G234600 Theobroma cacao HOM05D006687 ORTHO05D008379 2.0e-231 805.4 414 95.2
Duzib052G0918 Durio zibethinus HOM05D006687 ORTHO05D008379 2.1e-228 795.4 414 93.7
COL.COLO4_21511 Corchorus olitorius HOM05D006687 ORTHO05D008379 4.6e-228 794.3 414 93.7
ClCG05G005070 Citrullus lanatus HOM05D006687 ORTHO05D008379 3.0e-179 632.1 419 77.3
MELO3C006520.2 Cucumis melo HOM05D006687 ORTHO05D008379 3.0e-179 632.1 419 77.3
CsaV3_3G013130 Cucumis sativus L. HOM05D006687 ORTHO05D008379 3.9e-179 631.7 419 77.3
Prupe.1G016800 Prunus persica HOM05D006687 ORTHO05D008379 4.5e-175 618.2 416 75.5
RcHm_v2.0_Chr4g0415641 Rosa chinensis HOM05D006687 ORTHO05D008379 1.3e-174 616.7 422 75.8
FAN07G2338 Fragaria x ananassa HOM05D006687 ORTHO05D008379 5.0e-174 614.8 421 75.8
Nn1g02367 Nelumbo nucifera HOM05D006687 ORTHO05D008379 6.5e-174 614.4 419 74.5
Cpa.g.sc58.86 Carica papaya HOM05D006687 ORTHO05D008379 3.2e-173 612.1 438 71.5
FvH4_4g16100 Fragaria vesca HOM05D006687 ORTHO05D008379 3.2e-173 612.1 419 75.2
FAN22G0081 Fragaria x ananassa HOM05D006687 ORTHO05D008379 4.2e-173 611.7 421 75.3
MD16G1196600 Malus domestica HOM05D006687 ORTHO05D008379 7.2e-173 610.9 421 73.9
Sed0004090 Sechium edule HOM05D006687 ORTHO05D008379 2.1e-172 609.4 419 74.9
MD13G1196100 Malus domestica HOM05D006687 ORTHO05D008379 3.0e-171 605.5 421 74.6
Manes.15G030400 Manihot esculenta HOM05D006687 ORTHO05D008379 8.8e-171 604.0 416 73.8
CANSAT78G1673 Cannabis sativa HOM05D006687 ORTHO05D008379 1.1e-170 603.6 419 74.0
FAN17G0837 Fragaria x ananassa HOM05D006687 ORTHO05D008379 1.5e-170 603.2 418 75.1
TWI53G1185 Tripterygium wilfordii HOM05D006687 ORTHO05D008379 5.7e-170 601.3 421 73.4
Aqoxy2G03421 Aquilegia oxysepala HOM05D006687 ORTHO05D008379 1.7e-169 599.7 427 71.9
FAN12G1590 Fragaria x ananassa HOM05D006687 ORTHO05D008379 1.7e-169 599.7 442 71.3
Sed0025649 Sechium edule HOM05D006687 ORTHO05D008379 8.2e-169 597.4 412 73.1
Atru.chr4.2438 Acer truncatum HOM05D006687 ORTHO05D008379 1.5e-167 593.2 422 71.8
arahy.Tifrunner.gnm1.ann1.SVC7LK Arachis hypogaea HOM05D006687 ORTHO05D008379 1.5e-167 593.2 420 72.6
PSO210G5270 Papaver somniferum HOM05D006687 ORTHO05D008379 2.0e-167 592.8 423 70.7
PSO761G0513 Papaver somniferum HOM05D006687 ORTHO05D008379 2.6e-167 592.4 423 70.4
TAR636G0889 Trochodendron aralioides HOM05D006687 ORTHO05D008379 2.6e-167 592.4 419 73.3
CSS0011956 Camellia sinensis var. sinensis HOM05D006687 ORTHO05D008379 7.7e-167 590.9 422 72.7
Glyma.11G008100 Glycine max HOM05D006687 ORTHO05D008379 1.7e-166 589.7 416 72.1
arahy.Tifrunner.gnm1.ann1.S3TICT Arachis hypogaea HOM05D006687 ORTHO05D008379 2.2e-166 589.3 422 72.5
CSS0001912 Camellia sinensis var. sinensis HOM05D006687 ORTHO05D008379 6.5e-166 587.8 422 72.5
Lalb_Chr05g0211161 Lupinus albus HOM05D006687 ORTHO05D008379 3.2e-165 585.5 417 72.4
Haze_00870 Corylus avellana HOM05D006687 ORTHO05D008379 5.5e-165 584.7 428 72.2
LjContig00222g0006058 Lotus japonicus HOM05D006687 ORTHO05D008379 2.1e-164 582.8 416 72.1
Phvul.002G042300 Phaseolus vulgaris HOM05D006687 ORTHO05D008379 4.7e-164 581.6 416 71.4
Potri.010G085500 Populus trichocarpa HOM05D006687 ORTHO05D008379 7.9e-164 580.9 418 70.1
Sabra08G0118100 Salix brachista HOM05D006687 ORTHO05D008379 2.3e-163 579.3 416 70.9
VMungo1215G0895 Vigna mungo HOM05D006687 ORTHO05D008379 3.0e-163 578.9 416 71.4
Dinv44552 Davidia involucrata HOM05D006687 ORTHO05D008379 2.6e-162 575.9 419 70.9
PGR004G1051 Punica granatum HOM05D006687 ORTHO05D008379 2.6e-162 575.9 414 71.0
THA.LOC104808559 Tarenaya hassleriana HOM05D006687 ORTHO05D008379 2.6e-162 575.9 425 69.4
Actinidia23525 Actinidia chinensis HOM05D006687 ORTHO05D008379 5.7e-162 574.7 418 70.6
CiPaw.01G168400 Carya illinoinensis HOM05D006687 ORTHO05D008379 2.2e-161 572.8 428 70.6
Sc13g0004520 Simmondsia chinensis HOM05D006687 ORTHO05D008379 1.8e-160 569.7 423 68.8
CDE05G2168 Ceratophyllum demersum HOM05D006687 ORTHO05D008379 2.4e-160 569.3 423 69.7
Aa31LG8G9120 Aethionema arabicum HOM05D006687 ORTHO05D008379 7.7e-159 564.3 426 68.8
QL06p001782 Quercus lobata HOM05D006687 ORTHO05D008379 1.3e-158 563.5 427 69.8
TPR.G37926 Trifolium pratense HOM05D006687 ORTHO05D008379 6.5e-158 561.2 416 69.7
Psat2g189880 Pisum sativum HOM05D006687 ORTHO05D008379 9.4e-157 557.4 416 69.5
Carub.0003s2274 Capsella rubella HOM05D006687 ORTHO05D008379 1.2e-156 557.0 425 66.6
Medtr5g006960 Medicago truncatula HOM05D006687 ORTHO05D008379 2.1e-156 556.2 419 70.2
Ca_24424_v3 Cicer arietinum L. HOM05D006687 ORTHO05D008379 6.1e-156 554.7 416 70.0
Sp3g20360 Schrenkiella parvula HOM05D006687 ORTHO05D008379 6.1e-156 554.7 425 66.8
AL3G36890 Arabidopsis lyrata HOM05D006687 ORTHO05D008379 1.4e-155 553.5 426 66.7
CARHR098480 Cardamine hirsuta HOM05D006687 ORTHO05D008379 8.8e-155 550.8 427 67.0
Thhalv10020820m.g Eutrema salsugineum HOM05D006687 ORTHO05D008379 8.8e-155 550.8 425 66.8
AT3G22590 Arabidopsis thaliana HOM05D006687 ORTHO05D008379 2.6e-154 549.3 426 66.7
CAN.G231.10 Capsicum annuum HOM05D006687 ORTHO05D008379 9.7e-154 547.4 417 68.6
A05p26080 Brassica napus HOM05D006687 ORTHO05D008379 9.1e-152 540.8 424 66.7
BraA05t21491Z Brassica rapa HOM05D006687 ORTHO05D008379 1.2e-151 540.4 424 66.3
Nitab4.5_0000321g0170 Nicotiana tabacum HOM05D006687 ORTHO05D008379 1.2e-151 540.4 416 68.8
BcaB06g26371 Brassica carinata HOM05D006687 ORTHO05D008379 4.5e-151 538.5 423 66.7
BcaC05g28033 Brassica carinata HOM05D006687 ORTHO05D008379 4.5e-151 538.5 424 66.5
C05p40480 Brassica napus HOM05D006687 ORTHO05D008379 4.5e-151 538.5 424 66.5
BolC5t32790H Brassica oleracea HOM05D006687 ORTHO05D008379 4.5e-151 538.5 424 66.5
Ciclev10005124m.g Citrus clementina HOM05D006687 ORTHO05D008379 5.9e-151 538.1 421 66.0
Lj3A732T77 Lonicera japonica HOM05D006687 ORTHO05D008379 5.9e-151 538.1 424 66.5
Lsat_1_v5_gn_6_103081 Lactuca sativa HOM05D006687 ORTHO05D008379 8.0e-148 527.7 417 65.5
Hund10579 Selenicereus undatus HOM05D006687 ORTHO05D008379 6.8e-147 524.6 419 65.4
PGSC0003DMG400016264 Solanum tuberosum HOM05D006687 ORTHO05D008379 2.8e-145 519.2 419 65.2
Solyc06g054080.3 Solanum lycopersicum HOM05D006687 ORTHO05D008379 1.1e-144 517.3 416 65.4
Sopen06g019240 Solanum pennellii HOM05D006687 ORTHO05D008379 1.1e-144 517.3 416 65.4
AUR62034718 Chenopodium quinoa HOM05D006687 ORTHO05D008379 1.0e-142 510.8 420 64.5
Oeu042805.1 Olea europaea HOM05D006687 ORTHO05D008379 5.0e-142 508.4 411 65.0
SGA_v2.0_scaffold191G40505 Striga asiatica HOM05D006687 ORTHO05D008379 1.5e-141 506.9 415 64.6
AUR62033670 Chenopodium quinoa HOM05D006687 ORTHO05D008379 1.9e-141 506.5 423 64.1
SalBow2G2000 Salvia bowleyana HOM05D006687 ORTHO05D008379 1.9e-141 506.5 414 66.2
ECA246G3355 Erigeron canadensis HOM05D006687 ORTHO05D008379 4.2e-141 505.4 414 63.8
EL10Ac3g06489 Beta vulgaris HOM05D006687 ORTHO05D008379 1.4e-139 500.4 414 63.8
Migut.G00354 Erythranthe guttata HOM05D006687 ORTHO05D008379 1.4e-139 500.4 415 64.6
Ah.13g071710 Amaranthus hybridus HOM05D006687 ORTHO05D008379 1.8e-139 500.0 416 63.9
HanXRQChr11g0327791 Helianthus annuus HOM05D006687 ORTHO05D008379 3.4e-138 495.7 405 64.2
Hma1.2p1_1572F.1_g291370 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 3.7e-137 492.3 417 63.1
Actinidia40137 Actinidia chinensis HOM05D006687 ORTHO05D008379 1.2e-135 487.3 417 63.8
ATR0665G006 Amborella trichopoda HOM05D006687 ORTHO05D008379 1.2e-135 487.3 480 57.1
DCAR_024171 Daucus carota HOM05D006687 ORTHO05D008379 2.3e-134 483.0 389 64.0
Peaxi162Scf00131g00127 Petunia axillaris HOM05D006687 ORTHO05D008379 3.8e-134 482.3 401 64.1
GSVIVG01018007001 Vitis vinifera HOM05D006687 ORTHO05D008379 5.0e-134 481.9 416 63.0
unitig_749.g14072 Utricularia gibba HOM05D006687 ORTHO05D008379 4.4e-130 468.8 412 61.9
Sc13g0006070 Simmondsia chinensis HOM05D006687 ORTHO05D008379 3.2e-128 462.6 364 65.4
Eucgr.H03443 Eucalyptus grandis HOM05D006687 ORTHO05D008379 5.8e-122 441.8 259 85.3
Cc03_g04010 Coffea canephora HOM05D006687 ORTHO05D008379 9.2e-120 434.5 414 58.2
Potri.008G155000 Populus trichocarpa HOM05D006687 ORTHO05D008379 2.0e-114 416.8 259 81.5
SEGI_38182 Sequoiadendron giganteum HOM05D006687 ORTHO05D008379 4.6e-111 405.6 465 48.6
Rhsim04G0200900 Rhododendron simsii HOM05D006687 ORTHO05D008379 1.5e-109 400.6 261 77.4
HPP92_018620 Vanilla planifolia HOM05D006687 ORTHO05D008379 3.2e-104 382.9 243 79.4
Mapoly0001s0040 Marchantia polymorpha HOM05D006687 ORTHO05D008379 1.2e-98 364.4 468 44.2
Zm00001eb217880 Zea mays HOM05D006687 ORTHO05D008379 7.6e-98 361.7 417 49.6
Hma1.2p1_1572F.1_g291380 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 1.3e-94 350.9 252 72.6
Hma1.2p1_2201F.1_g317030 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 1.6e-92 344.0 252 71.8
Os03g0664700 Oryza sativa ssp. japonica HOM05D006687 ORTHO05D008379 3.1e-91 339.7 418 47.6
Pp3c6_19770 Physcomitrium patens HOM05D006687 ORTHO05D008379 4.9e-89 332.4 464 44.0
AagrBONN_evm.TU.Sc2ySwM_344.3801 Anthoceros agrestis HOM05D006687 ORTHO05D008379 8.1e-76 288.5 437 41.4
TAR365G0539 Trochodendron aralioides HOM05D006687 ORTHO05D008379 4.9e-73 279.3 184 78.3
Dinv14009 Davidia involucrata HOM05D006687 ORTHO05D008379 6.5e-73 278.9 302 53.6
CBR_g48312 Chara braunii HOM05D006687 ORTHO05D008379 1.8e-46 191.0 187 48.7
Oeu042804.1 Olea europaea HOM05D006687 ORTHO05D008379 1.2e-37 161.8 178 48.3
PRCOL_00002517 Prasinoderma coloniale HOM05D006687 ORTHO05D008379 4.8e-36 156.4 483 27.5
MCO02G458 Micromonas commoda HOM05D006687 ORTHO05D008379 2.4e-35 154.1 437 29.1
Cre02.g104550 Chlamydomonas reinhardtii HOM05D006687 ORTHO05D008379 1.2e-34 151.8 502 26.1
Dinv10241 Davidia involucrata HOM05D006687 ORTHO05D008379 3.2e-32 143.7 202 47.0
Rhsim04G0201000 Rhododendron simsii HOM05D001311 ORTHO05D001204 5.2e-30 136.3 112 58.0
MD09G1133500 Malus domestica HOM05D006687 ORTHO05D008379 2.3e-25 120.9 98 65.3
MD13G1132600 Malus domestica HOM05D006687 ORTHO05D008379 5.5e-24 116.3 70 78.6
HanXRQChr12g0381471 Helianthus annuus HOM05D006687 ORTHO05D008379 7.5e-21 105.9 106 51.9
vmacro02845 Vaccinium macrocarpon HOM05D006687 ORTHO05D008379 7.5e-13 79.3 116 42.2


User provided reference genes

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