Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G000400 Gossypium raimondii HOM05D000324 ORTHO05D015143 1.3e-44 182.6 88 100.0
Gohir.D02G000050 Gossypium hirsutum HOM05D010297 ORTHO05D015143 2.9e-23 111.7 54 96.3
Gorai.010G245900 Gossypium raimondii HOM05D010297 ORTHO05D015143 1.4e-22 109.4 55 94.5
Gohir.A05G322700 Gossypium hirsutum HOM05D000324 ORTHO05D004875 5.5e-22 107.5 55 92.7
Gohir.A05G416701 Gossypium hirsutum HOM05D000324 ORTHO05D015143 5.5e-22 107.5 55 92.7
Gorai.008G298800 Gossypium raimondii HOM05D000324 ORTHO05D015143 7.1e-22 107.1 55 92.7
Gorai.009G349600 Gossypium raimondii HOM05D000324 ORTHO05D004875 9.3e-22 106.7 55 92.7
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 7.9e-21 103.6 55 89.1
Gohir.A01G232200 Gossypium hirsutum HOM05D010297 ORTHO05D015143 7.9e-21 103.6 55 89.1
Gohir.D05G325350 Gossypium hirsutum HOM05D000324 ORTHO05D004875 7.9e-21 103.6 55 90.9
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 7.9e-21 103.6 55 89.1
CANSAT78G1272 Cannabis sativa HOM05D000324 ORTHO05D004875 4.2e-14 81.3 65 56.9
Duzib212G0095 Durio zibethinus HOM05D000324 ORTHO05D004875 1.2e-13 79.7 65 58.5
vmacro00432 Vaccinium macrocarpon HOM05D000324 ORTHO05D004875 2.1e-13 79.0 64 54.7
COL.COLO4_05433 Corchorus olitorius HOM05D000324 ORTHO05D004875 2.7e-13 78.6 55 65.5
GSVIVG01022434001 Vitis vinifera HOM05D000324 ORTHO05D004875 3.6e-13 78.2 65 53.8
Rhsim09G0061500 Rhododendron simsii HOM05D000324 ORTHO05D004875 4.6e-13 77.8 64 53.1
SalBow8G0037 Salvia bowleyana HOM05D000324 ORTHO05D004875 4.6e-13 77.8 65 52.3
MD04G1018900 Malus domestica HOM05D000324 ORTHO05D004875 6.1e-13 77.4 65 50.8
Duzib268G1033 Durio zibethinus HOM05D000324 ORTHO05D004875 7.9e-13 77.0 55 63.6
FAN07G0429 Fragaria x ananassa HOM05D000324 ORTHO05D004875 7.9e-13 77.0 63 54.0
Rhsim09G0031500 Rhododendron simsii HOM05D000324 ORTHO05D004875 7.9e-13 77.0 54 59.3
Thecc.04G193200 Theobroma cacao HOM05D000324 ORTHO05D004875 7.9e-13 77.0 65 55.4
Prupe.1G168200 Prunus persica HOM05D000324 ORTHO05D004875 1.0e-12 76.6 65 52.3
Aqoxy2G03912 Aquilegia oxysepala HOM05D000324 ORTHO05D004875 1.4e-12 76.3 55 61.8
Ciclev10004427m.g Citrus clementina HOM05D000324 ORTHO05D004875 1.4e-12 76.3 61 59.0
TAR362G1108 Trochodendron aralioides HOM05D000324 ORTHO05D004875 1.4e-12 76.3 65 52.3
Actinidia35826 Actinidia chinensis HOM05D000324 ORTHO05D004875 2.3e-12 75.5 63 54.0
TPR.G28942 Trifolium pratense HOM05D000324 ORTHO05D004875 3.9e-12 74.7 65 52.3
AT4G14070 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 5.1e-12 74.3 53 58.5
Nitab4.5_0000037g0030 Nicotiana tabacum HOM05D000324 ORTHO05D004875 5.1e-12 74.3 65 49.2
RcHm_v2.0_Chr4g0413021 Rosa chinensis HOM05D000324 ORTHO05D004875 5.1e-12 74.3 65 53.8
Actinidia20854 Actinidia chinensis HOM05D000324 ORTHO05D004875 6.7e-12 73.9 63 52.4
BcaB03g14616 Brassica carinata HOM05D000324 ORTHO05D004875 6.7e-12 73.9 55 58.2
Glyma.05G151200 Glycine max HOM05D000324 ORTHO05D004875 6.7e-12 73.9 65 55.4
MD04G1018700 Malus domestica HOM05D000324 ORTHO05D004875 6.7e-12 73.9 63 52.4
Peaxi162Scf00286g01036 Petunia axillaris HOM05D000324 ORTHO05D004875 6.7e-12 73.9 65 49.2
RcHm_v2.0_Chr4g0412911 Rosa chinensis HOM05D000324 ORTHO05D004875 6.7e-12 73.9 65 53.8
CARHR220060 Cardamine hirsuta HOM05D000324 ORTHO05D004875 8.8e-12 73.6 53 58.5
CiPaw.01G115100 Carya illinoinensis HOM05D000324 ORTHO05D004875 8.8e-12 73.6 65 50.8
Gohir.D10G137300 Gossypium hirsutum HOM05D000324 ORTHO05D004875 8.8e-12 73.6 55 60.0
Gorai.011G152500 Gossypium raimondii HOM05D000324 ORTHO05D004875 8.8e-12 73.6 55 60.0
Hma1.2p1_0806F.1_g221370 Hydrangea macrophylla HOM05D000324 ORTHO05D004875 8.8e-12 73.6 65 50.8
Oeu049053.1 Olea europaea HOM05D000324 ORTHO05D004875 8.8e-12 73.6 65 52.3
Oeu050714.1 Olea europaea HOM05D000324 ORTHO05D004875 8.8e-12 73.6 65 50.8
PGR083G2335 Punica granatum HOM05D000324 ORTHO05D004875 8.8e-12 73.6 55 56.4
ATR0069G039 Amborella trichopoda HOM05D000324 ORTHO05D004875 1.1e-11 73.2 54 55.6
AL3G38770 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 1.1e-11 73.2 55 54.5
Psat5g099440 Pisum sativum HOM05D000324 ORTHO05D004875 1.1e-11 73.2 55 58.2
A03p43350 Brassica napus HOM05D000324 ORTHO05D004875 1.5e-11 72.8 55 56.4
Dinv18404 Davidia involucrata HOM05D000324 ORTHO05D004875 1.5e-11 72.8 65 47.7
FvH4_4g13140 Fragaria vesca HOM05D000324 ORTHO05D004875 1.5e-11 72.8 63 54.0
Gohir.A10G128800 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.5e-11 72.8 55 58.2
MBI07_g15662_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D004875 1.5e-11 72.8 65 49.2
Aa31LG9G3300 Aethionema arabicum HOM05D000324 ORTHO05D004875 2.0e-11 72.4 55 54.5
AL7G42350 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 2.0e-11 72.4 53 54.7
CSS0006110 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D004875 2.0e-11 72.4 63 50.8
COL.COLO4_05432 Corchorus olitorius HOM05D000324 ORTHO05D004875 2.0e-11 72.4 65 50.8
TPR.G11871 Trifolium pratense HOM05D000324 ORTHO05D004875 2.0e-11 72.4 65 52.3
BraA03t13473Z Brassica rapa HOM05D000324 ORTHO05D004875 2.5e-11 72.0 55 54.5
Medtr8g083170 Medicago truncatula HOM05D000324 ORTHO05D004875 2.5e-11 72.0 65 52.3
Phvul.001G265700 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 2.5e-11 72.0 55 58.2
Prupe.1G167500 Prunus persica HOM05D000324 ORTHO05D004875 2.5e-11 72.0 63 49.2
Nn1g08146 Nelumbo nucifera HOM05D000324 ORTHO05D004875 3.3e-11 71.6 65 49.2
Medtr3g084450 Medicago truncatula HOM05D000324 ORTHO05D004875 4.3e-11 71.2 55 56.4
Potri.017G060100 Populus trichocarpa HOM05D000324 ORTHO05D004875 4.3e-11 71.2 55 58.2
TWI09G0239 Tripterygium wilfordii HOM05D000324 ORTHO05D004875 4.3e-11 71.2 65 50.8
Atru.chr4.1549 Acer truncatum HOM05D000324 ORTHO05D004875 5.7e-11 70.9 65 47.7
CARHR099770 Cardamine hirsuta HOM05D000324 ORTHO05D004875 5.7e-11 70.9 55 54.5
Carub.0007s2836 Capsella rubella HOM05D000324 ORTHO05D004875 7.4e-11 70.5 53 52.8
Lalb_Chr11g0075861 Lupinus albus HOM05D000324 ORTHO05D004875 7.4e-11 70.5 65 49.2
AT3G23790 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 9.7e-11 70.1 55 52.7
CAN.G1155.12 Capsicum annuum HOM05D000324 ORTHO05D004875 9.7e-11 70.1 65 47.7
Sp3g21490 Schrenkiella parvula HOM05D000324 ORTHO05D004875 9.7e-11 70.1 55 50.9
Hund24436 Selenicereus undatus HOM05D000324 ORTHO05D004875 9.7e-11 70.1 53 54.7
Zm00001eb064380 Zea mays HOM05D000324 ORTHO05D004875 9.7e-11 70.1 65 50.8
Cpa.g.sc157.34 Carica papaya HOM05D000324 ORTHO05D004875 1.3e-10 69.7 53 56.6
Cfa008641 Carpinus fangiana HOM05D000324 ORTHO05D004875 1.3e-10 69.7 65 52.3
Ca_16424_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 1.3e-10 69.7 55 54.5
Thhalv10002419m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.3e-10 69.7 55 52.7
RcHm_v2.0_Chr4g0413231 Rosa chinensis HOM05D000324 ORTHO05D004875 1.3e-10 69.7 53 50.9
Sopen09g035350 Solanum pennellii HOM05D000324 ORTHO05D004875 1.3e-10 69.7 65 49.2
PGSC0003DMG400020593 Solanum tuberosum HOM05D000324 ORTHO05D004875 1.3e-10 69.7 65 49.2
VMungo1383G3515 Vigna mungo HOM05D000324 ORTHO05D004875 1.3e-10 69.7 55 56.4
Migut.G00782 Erythranthe guttata HOM05D000324 ORTHO05D004875 1.7e-10 69.3 65 49.2
Thhalv10024478m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.7e-10 69.3 55 54.5
PSO017G1881 Papaver somniferum HOM05D000324 ORTHO05D004875 1.7e-10 69.3 65 49.2
PSO063G7360 Papaver somniferum HOM05D000324 ORTHO05D004875 1.7e-10 69.3 65 49.2
Solyc09g092450.3 Solanum lycopersicum HOM05D000324 ORTHO05D004875 1.7e-10 69.3 65 49.2
arahy.Tifrunner.gnm1.ann1.II2GNC Arachis hypogaea HOM05D000324 ORTHO05D004875 2.2e-10 68.9 63 47.6
Lj4g0014913 Lotus japonicus HOM05D000324 ORTHO05D004875 2.2e-10 68.9 63 49.2
Hund19019 Selenicereus undatus HOM05D000324 ORTHO05D004875 2.2e-10 68.9 53 54.7
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 2.2e-10 68.9 55 54.5
arahy.Tifrunner.gnm1.ann1.8EJC90 Arachis hypogaea HOM05D000324 ORTHO05D004875 2.8e-10 68.6 63 47.6
BcaC01g03365 Brassica carinata HOM05D000324 ORTHO05D004875 2.8e-10 68.6 55 54.5
C03p53280 Brassica napus HOM05D000324 ORTHO05D004875 2.8e-10 68.6 55 54.5
BolC3t17589H Brassica oleracea HOM05D000324 ORTHO05D004875 2.8e-10 68.6 55 54.5
Phvul.003G051300 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 2.8e-10 68.6 65 49.2
Ah.04g149530 Amaranthus hybridus HOM05D000020 ORTHO05D004875 3.7e-10 68.2 53 52.8
AUR62020902 Chenopodium quinoa HOM05D000324 ORTHO05D004875 3.7e-10 68.2 54 53.7
Sabra17G0054000 Salix brachista HOM05D000324 ORTHO05D004875 3.7e-10 68.2 55 56.4
SGA_v2.0_scaffold19G08786 Striga asiatica HOM05D000324 ORTHO05D004875 3.7e-10 68.2 64 50.0
Aa31LG8G10350 Aethionema arabicum HOM05D000324 ORTHO05D004875 4.8e-10 67.8 55 50.9
Carub.0003s2409 Capsella rubella HOM05D000324 ORTHO05D004875 4.8e-10 67.8 55 49.1
Psat7g076000 Pisum sativum HOM05D000324 ORTHO05D004875 4.8e-10 67.8 63 50.8
THA.LOC104808688 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 4.8e-10 67.8 55 54.5
EL10Ac3g07424 Beta vulgaris HOM05D000324 ORTHO05D004875 8.2e-10 67.0 55 54.5
Cc03_g09380 Coffea canephora HOM05D000324 ORTHO05D004875 8.2e-10 67.0 65 49.2
Os03g0845500 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D004875 8.2e-10 67.0 65 49.2
AUR62018517 Chenopodium quinoa HOM05D000324 ORTHO05D004875 1.1e-09 66.6 53 54.7
Lalb_Chr13g0294751 Lupinus albus HOM05D000324 ORTHO05D004875 1.1e-09 66.6 55 52.7
Medtr3g084470 Medicago truncatula HOM05D000324 ORTHO05D004875 1.1e-09 66.6 55 54.5
Sed0014440 Sechium edule HOM05D000324 ORTHO05D004875 1.8e-09 65.9 55 50.9
A04p08090 Brassica napus HOM05D000324 ORTHO05D004875 2.4e-09 65.5 55 52.7
BraA04t16497Z Brassica rapa HOM05D000324 ORTHO05D004875 2.4e-09 65.5 55 52.7
HanXRQChr01g0022111 Helianthus annuus HOM05D000324 ORTHO05D004875 2.4e-09 65.5 61 49.2
Lj3C353G5 Lonicera japonica HOM05D000324 ORTHO05D004875 2.4e-09 65.5 55 54.5
Sp7g11870 Schrenkiella parvula HOM05D000324 ORTHO05D004875 2.4e-09 65.5 55 52.7
Hund24430 Selenicereus undatus HOM05D000324 ORTHO05D004875 2.4e-09 65.5 55 52.7
BcaB02g08635 Brassica carinata HOM05D000324 ORTHO05D004875 3.1e-09 65.1 55 50.9
BcaC02g09362 Brassica carinata HOM05D000324 ORTHO05D004875 3.1e-09 65.1 55 50.9
C04p41750 Brassica napus HOM05D000324 ORTHO05D004875 3.1e-09 65.1 55 50.9
BolC4t25753H Brassica oleracea HOM05D000324 ORTHO05D004875 3.1e-09 65.1 55 50.9
Glyma.11G254100 Glycine max HOM05D000324 ORTHO05D004875 3.1e-09 65.1 55 50.9
Manes.01G056450 Manihot esculenta HOM05D000324 ORTHO05D004875 3.1e-09 65.1 65 44.6
ClCG06G003220 Citrullus lanatus HOM05D000324 ORTHO05D004875 4.1e-09 64.7 53 52.8
DCAR_026665 Daucus carota HOM05D000324 ORTHO05D004875 4.1e-09 64.7 65 44.6
FvH4_4g13151 Fragaria vesca HOM05D000324 ORTHO05D004875 4.1e-09 64.7 53 49.1
FAN12G1738 Fragaria x ananassa HOM05D000324 ORTHO05D004875 4.1e-09 64.7 53 49.1
Lj6g0003386 Lotus japonicus HOM05D000324 ORTHO05D004875 4.1e-09 64.7 55 52.7
Sc13g0000480 Simmondsia chinensis HOM05D000324 ORTHO05D004875 4.1e-09 64.7 63 49.2
ECA248G0929 Erigeron canadensis HOM05D000324 ORTHO05D004875 5.3e-09 64.3 61 45.9
Eucgr.H02649 Eucalyptus grandis HOM05D000324 ORTHO05D004875 6.9e-09 63.9 55 56.4
FAN17G1435 Fragaria x ananassa HOM05D000324 ORTHO05D004875 6.9e-09 63.9 87 40.2
SEGI_31701 Sequoiadendron giganteum HOM05D000324 ORTHO05D004875 6.9e-09 63.9 53 49.1
Lsat_1_v5_gn_1_70400 Lactuca sativa HOM05D000324 ORTHO05D004875 9.1e-09 63.5 59 50.8
ECA248G2180 Erigeron canadensis HOM05D000324 ORTHO05D004875 2.0e-08 62.4 61 49.2
Lsat_1_v5_gn_1_70360 Lactuca sativa HOM05D000324 ORTHO05D004875 2.0e-08 62.4 59 50.8
THA.LOC104804788 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 2.0e-08 62.4 55 52.7
CsaV3_6G001070 Cucumis sativus L. HOM05D000324 ORTHO05D004875 2.6e-08 62.0 53 50.9
MELO3C021161.2 Cucumis melo HOM05D000324 ORTHO05D004875 4.5e-08 61.2 53 50.9
Lsat_1_v5_gn_1_70301 Lactuca sativa HOM05D000324 ORTHO05D004875 4.5e-08 61.2 59 47.5
Potri.001G321800 Populus trichocarpa HOM05D000324 ORTHO05D004875 4.5e-08 61.2 52 55.8
Manes.05G201400 Manihot esculenta HOM05D000324 ORTHO05D004875 7.7e-08 60.5 61 44.3
ECA248G0353 Erigeron canadensis HOM05D000324 ORTHO05D004875 1.9e-06 55.8 61 47.5
SMO364G0046 Selaginella moellendorffii HOM05D000324 ORTHO05D004875 1.9e-06 55.8 46 58.7
AagrBONN_evm.TU.Sc2ySwM_344.4832 Anthoceros agrestis HOM05D000324 ORTHO05D004875 2.5e-06 55.5 52 51.9
Mapoly0169s0028 Marchantia polymorpha HOM05D000324 ORTHO05D004875 2.5e-06 55.5 52 50.0


User provided reference genes

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