Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 0.0e+00 1187.6 611 100.0
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 0.0e+00 1187.6 611 100.0
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 0.0e+00 1172.5 611 98.7
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.6e-298 1028.9 611 86.6
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 4.6e-293 1010.7 611 84.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.4e-278 962.6 572 87.8
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 2.6e-264 915.2 613 76.2
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 9.3e-262 906.7 614 76.2
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.1e-261 905.6 616 75.6
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.3e-260 902.9 620 75.3
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.3e-258 896.3 612 74.8
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 6.3e-258 894.0 614 75.2
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.2e-256 889.8 615 74.8
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.5e-256 889.4 613 74.2
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.2e-255 885.6 615 75.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-255 885.6 614 74.1
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 2.2e-255 885.6 617 74.1
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.8e-255 884.8 623 73.4
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.8e-255 884.8 617 74.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.4e-254 882.9 613 73.7
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.2e-253 879.8 613 73.1
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.2e-253 879.8 617 73.3
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 7.9e-253 877.1 617 73.6
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.9e-251 872.5 614 73.0
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 7.4e-251 870.5 613 72.6
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 9.7e-251 870.2 614 72.8
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 3.1e-249 865.1 612 72.2
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.5e-248 862.8 613 73.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 2.0e-248 862.4 612 71.7
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.6e-248 862.1 610 73.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 2.9e-247 858.6 613 72.1
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 9.4e-246 853.6 615 70.2
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.6e-245 852.8 614 70.4
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.0e-244 850.1 617 71.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.8e-244 849.4 617 71.3
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.0e-243 845.9 613 70.5
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 5.7e-243 844.3 619 69.3
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 7.4e-243 844.0 615 71.1
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 9.7e-243 843.6 691 65.8
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 9.7e-243 843.6 614 69.9
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 6.3e-242 840.9 629 70.1
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.0e-239 833.6 614 69.7
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.1e-238 830.1 614 69.2
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 5.5e-238 827.8 616 69.6
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 9.4e-238 827.0 616 68.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 9.4e-238 827.0 743 61.1
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.1e-237 825.9 614 69.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 4.7e-237 824.7 614 69.1
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 6.1e-237 824.3 613 68.7
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.8e-236 822.8 616 69.3
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 2.3e-236 822.4 615 68.8
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 3.9e-236 821.6 614 69.1
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 8.8e-236 820.5 614 69.4
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.6e-235 818.9 615 67.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.6e-235 818.9 612 68.1
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.4e-235 818.1 622 68.2
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 6.3e-234 814.3 617 68.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 8.2e-234 813.9 615 67.6
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.4e-233 813.1 613 67.5
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 4.5e-232 808.1 614 67.9
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 5.9e-232 807.7 615 67.8
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 7.7e-232 807.4 613 66.4
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 7.7e-232 807.4 569 73.1
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.3e-231 806.6 613 67.0
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 2.2e-231 805.8 614 67.9
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 3.8e-231 805.1 616 66.6
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 5.0e-231 804.7 614 67.4
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 5.0e-231 804.7 614 65.1
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 5.0e-231 804.7 597 69.5
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 6.5e-231 804.3 614 67.3
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 8.5e-231 803.9 614 67.6
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 8.5e-231 803.9 613 67.4
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.9e-230 802.7 614 67.6
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 4.2e-230 801.6 609 67.7
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 5.5e-230 801.2 611 67.4
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 4.7e-229 798.1 611 68.6
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.7e-226 789.6 563 70.3
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 7.7e-224 780.8 612 67.0
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.0e-223 780.4 620 64.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.2e-223 779.2 614 64.8
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 8.8e-220 767.3 608 66.1
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.2e-218 762.7 546 72.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 6.3e-218 761.1 597 67.0
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.9e-215 752.3 597 65.3
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 3.8e-215 751.9 614 62.5
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 3.6e-213 745.3 547 69.3
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 5.8e-203 711.4 501 74.5
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 8.6e-199 697.6 615 60.0
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 8.3e-194 681.0 624 58.0
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.3e-191 673.7 611 59.7
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.4e-188 663.7 618 57.9
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 3.6e-173 612.5 679 49.9
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.8e-172 610.1 687 53.9
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 4.3e-166 589.0 529 58.8
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.2e-155 554.3 491 62.3
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 3.8e-154 549.3 386 73.6
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.1e-150 537.7 506 56.3
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 9.0e-148 528.1 356 75.6
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 4.5e-147 525.8 377 72.9
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 2.7e-128 463.4 362 68.8
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.3e-125 454.5 364 67.9
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 7.2e-121 438.7 437 57.2
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-119 433.0 274 79.2
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 5.2e-111 406.0 257 79.8
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.4e-108 397.1 257 76.3
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 2.5e-105 387.1 643 38.4
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.2e-105 386.3 256 76.2
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 2.1e-104 384.0 320 62.5
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.5e-102 377.9 244 77.9
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 5.2e-95 352.8 232 75.0
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 1.4e-84 318.2 627 35.7
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.6e-80 304.7 179 81.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.5e-59 233.8 169 72.2
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 7.8e-59 232.6 217 62.2
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-55 222.2 234 56.4
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 5.1e-50 203.4 159 64.8
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.8e-48 197.6 111 86.5
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-47 195.7 111 85.6
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 4.5e-46 190.3 111 83.8
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-44 184.1 105 84.8
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-44 183.0 109 80.7
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.2e-43 182.2 110 77.3
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-36 157.5 136 64.0
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 4.2e-36 157.1 99 77.8
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 2.7e-35 154.5 104 69.2
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.4e-31 142.1 82 80.5
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 8.4e-29 132.9 83 78.3
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 9.3e-28 129.4 134 54.5
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 9.3e-28 129.4 122 63.1
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-25 122.1 69 84.1
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 3.3e-25 120.9 511 24.1
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 8.2e-24 116.3 81 65.4
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 8.2e-24 116.3 118 53.4
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-23 113.2 71 73.2
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 3.8e-21 107.5 83 60.2
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 5.0e-21 107.1 122 57.4
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-20 104.8 66 77.3
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-17 94.4 55 69.1
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 4.8e-16 90.5 55 78.2
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.4e-14 84.3 144 40.3
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.3e-13 82.4 174 31.6
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 6.5e-13 80.1 177 29.9
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 6.5e-13 80.1 182 31.3
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 8.5e-13 79.7 41 87.8
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.1e-12 79.3 50 78.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 4.7e-11 73.9 41 82.9
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 7.9e-11 73.2 182 30.8
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.0e-10 72.8 182 29.7
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-10 72.0 40 80.0
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 5.1e-10 70.5 183 29.5
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 4.4e-09 67.4 45 75.6
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 9.7e-09 66.2 41 70.7
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 2.8e-08 64.7 51 62.7
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.1e-07 62.8 183 27.3
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-06 59.3 41 70.7


User provided reference genes

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