Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 1.6e-293 1013.1 1064 100.0
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 9.1e-289 997.3 1062 99.5
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 5.7e-283 978.0 1062 98.4
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 1.9e-241 840.1 1061 88.3
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 2.8e-189 666.8 747 74.3
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 7.7e-171 605.5 754 69.8
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 1.7e-170 604.4 752 72.9
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 5.0e-162 576.2 720 66.1
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 2.1e-160 570.9 762 65.7
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.5e-158 564.7 778 70.8
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 7.5e-158 562.4 754 63.0
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 1.3e-157 561.6 762 65.5
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.3e-157 561.6 800 69.6
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 1.7e-157 561.2 775 62.1
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 1.7e-154 551.2 770 60.5
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 1.1e-153 548.5 756 65.3
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 2.0e-150 537.7 757 71.2
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 3.4e-150 537.0 757 69.4
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 3.5e-147 526.9 746 65.4
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 6.0e-147 526.2 763 65.5
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.3e-146 525.0 742 66.2
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 1.1e-145 521.9 762 55.6
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 1.9e-145 521.2 748 69.7
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 1.2e-144 518.5 742 62.5
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.1e-143 515.4 758 60.2
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 2.2e-141 507.7 749 55.5
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 2.1e-139 501.1 740 61.6
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 8.6e-138 495.7 756 61.0
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 1.9e-137 494.6 749 68.0
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 7.3e-137 492.7 762 62.1
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 2.1e-136 491.1 752 63.2
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 8.1e-136 489.2 728 61.8
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 4.0e-135 486.9 752 64.0
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 3.4e-134 483.8 761 67.4
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 2.2e-133 481.1 763 62.9
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 2.9e-133 480.7 756 61.5
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 8.4e-133 479.2 750 61.2
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.4e-132 478.4 752 62.2
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 9.2e-132 475.7 750 57.6
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 1.2e-131 475.3 759 63.2
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 3.5e-131 473.8 755 67.4
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 6.0e-131 473.0 752 62.2
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 1.7e-130 471.5 751 67.8
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 6.6e-130 469.5 755 67.0
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 8.7e-130 469.2 751 57.7
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 1.9e-129 468.0 770 66.2
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 1.9e-129 468.0 755 64.4
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 1.9e-129 468.0 751 58.6
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 1.9e-129 468.0 757 61.2
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 7.3e-129 466.1 750 54.1
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 9.6e-129 465.7 766 59.8
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 1.6e-128 464.9 758 66.2
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 8.1e-128 462.6 759 62.8
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 9.0e-127 459.1 753 57.5
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 1.2e-126 458.8 751 67.4
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 1.5e-126 458.4 754 57.6
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 1.5e-126 458.4 754 58.0
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 2.0e-126 458.0 728 67.7
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 4.4e-126 456.8 751 67.2
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 7.6e-126 456.1 754 57.2
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 7.6e-126 456.1 588 88.4
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 1.9e-124 451.4 750 57.2
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 2.4e-124 451.1 759 60.2
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 7.8e-123 446.0 751 65.8
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 6.6e-122 443.0 746 66.0
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 8.7e-122 442.6 746 59.4
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 3.6e-120 437.2 759 59.0
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 4.8e-120 436.8 848 56.0
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 8.1e-120 436.0 757 58.7
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 8.1e-120 436.0 754 66.4
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 6.9e-119 433.0 761 60.6
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 7.6e-118 429.5 756 60.3
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 2.9e-117 427.6 755 65.8
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 9.3e-116 422.5 746 64.6
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 2.4e-111 407.9 749 55.5
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 3.1e-111 407.5 773 63.6
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 1.3e-109 402.1 756 64.4
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 2.5e-108 397.9 755 63.7
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 5.5e-108 396.7 760 51.6
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 4.2e-92 344.0 751 52.2
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 7.9e-91 339.7 754 54.8
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 7.4e-89 333.2 310 55.5
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 5.9e-86 323.6 315 51.7
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 9.4e-84 316.2 709 51.8
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 2.3e-82 311.6 759 59.0
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 2.6e-81 308.1 290 52.1
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 1.7e-72 278.9 269 52.4
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 3.7e-72 277.7 295 47.5
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 6.3e-72 276.9 647 55.8
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 2.2e-61 241.9 274 44.5
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 1.5e-60 239.2 707 50.2
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 2.5e-52 211.8 126 78.6
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 7.2e-52 210.3 161 62.1
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 5.8e-41 174.1 194 50.5
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 2.7e-38 165.2 184 48.4
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 2.5e-36 158.7 287 33.1
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 2.0e-33 149.1 303 30.4
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 8.3e-32 143.7 172 44.8
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 9.9e-25 120.2 143 42.7
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 3.9e-21 108.2 555 23.4
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 6.6e-21 107.5 143 38.5
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.9e-20 105.9 82 64.6
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 2.8e-19 102.1 93 50.5
COL.COLO4_05229 Corchorus olitorius HOM05D006877 ORTHO05D008735 1.5e-17 96.3 57 80.7
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 2.3e-13 82.4 51 70.6
VMungo0251G3229 Vigna mungo HOM05D006877 ORTHO05D008735 1.6e-11 76.3 60 56.7
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 2.8e-11 75.5 120 34.2
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 8.1e-11 73.9 227 23.3
COL.COLO4_05230 Corchorus olitorius HOM05D006877 ORTHO05D008735 1.8e-10 72.8 40 87.5
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 4.0e-10 71.6 96 39.6
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 4.0e-10 71.6 94 38.3
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 5.3e-10 71.2 59 55.9
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 1.2e-09 70.1 148 30.4
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 1.5e-09 69.7 78 42.3
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 2.0e-09 69.3 94 36.2
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 2.6e-09 68.9 94 38.3
Solyc07g054480.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 3.4e-09 68.6 92 37.0
Sopen07g028420 Solanum pennellii HOM05D002479 ORTHO05D002675 3.4e-09 68.6 92 37.0
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 5.8e-09 67.8 94 37.2
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 5.8e-09 67.8 89 38.2
PGSC0003DMG400018365 Solanum tuberosum HOM05D002479 ORTHO05D002675 5.8e-09 67.8 92 37.0
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 9.9e-09 67.0 83 39.8
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.2e-08 65.9 92 35.9
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.2e-08 65.9 92 35.9
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 2.2e-08 65.9 85 36.5
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 2.2e-08 65.9 92 35.9
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 2.9e-08 65.5 97 35.1
MSTRG.14189 Avicennia marina HOM05D002479 ORTHO05D002675 2.9e-08 65.5 94 36.2
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 2.9e-08 65.5 92 34.8
AagrBONN_evm.TU.Sc2ySwM_344.385__386 Anthoceros agrestis HOM05D002479 ORTHO05D002675 3.8e-08 65.1 85 38.8
CAN.G996.9 Capsicum annuum HOM05D002479 ORTHO05D002675 3.8e-08 65.1 92 37.0
Sc06g0009220 Simmondsia chinensis HOM05D002479 ORTHO05D002675 3.8e-08 65.1 85 36.5
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 4.9e-08 64.7 85 38.8
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 4.9e-08 64.7 85 38.8
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 4.9e-08 64.7 85 38.8
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 4.9e-08 64.7 92 35.9
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 6.4e-08 64.3 85 36.5
SalBow7G2923 Salvia bowleyana HOM05D002479 ORTHO05D002675 8.4e-08 63.9 82 41.5
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.1e-07 63.5 119 31.9
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 2.4e-07 62.4 94 34.0
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 2.4e-07 62.4 78 38.5
Dinv14211 Davidia involucrata HOM05D000001 ORTHO05D000003 3.2e-07 62.0 312 21.2
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 7.1e-07 60.8 94 35.1
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 7.1e-07 60.8 85 37.6
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 7.1e-07 60.8 85 36.5
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 7.1e-07 60.8 85 36.5
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 7.1e-07 60.8 100 33.0
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 7.1e-07 60.8 85 37.6
FvH4_2g36310 Fragaria vesca HOM05D000001 ORTHO05D000003 9.3e-07 60.5 310 21.3
FAN27G1368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.3e-07 60.5 310 21.3
Potri.013G144800 Populus trichocarpa HOM05D002479 ORTHO05D002675 9.3e-07 60.5 94 36.2
HanXRQChr16g0519091 Helianthus annuus HOM05D000001 ORTHO05D000003 1.2e-06 60.1 293 18.4
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 1.6e-06 59.7 94 36.2
Cc07_g04050 Coffea canephora HOM05D000001 ORTHO05D000003 1.6e-06 59.7 201 22.9
Migut.H01034 Erythranthe guttata HOM05D002479 ORTHO05D002675 1.6e-06 59.7 94 34.0
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 2.1e-06 59.3 216 23.6
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 2.1e-06 59.3 81 37.0
Manes.13G150200 Manihot esculenta HOM05D002479 ORTHO05D002675 2.1e-06 59.3 94 34.0
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 2.1e-06 59.3 175 26.9
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 2.7e-06 58.9 90 35.6
Lalb_Chr13g0294621 Lupinus albus HOM05D006877 ORTHO05D008735 2.7e-06 58.9 60 45.0
Sabra13G0116800 Salix brachista HOM05D002479 ORTHO05D002675 2.7e-06 58.9 94 35.1
TAR636G0077 Trochodendron aralioides HOM05D006877 ORTHO05D008735 2.7e-06 58.9 43 62.8
Zm00001eb004770 Zea mays HOM05D002479 ORTHO05D002675 2.7e-06 58.9 100 31.0
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 3.5e-06 58.5 104 31.7
Os03g0162900 Oryza sativa ssp. japonica HOM05D002479 ORTHO05D002675 3.5e-06 58.5 103 29.1
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 3.5e-06 58.5 94 35.1
Cpa.g.sc34.115 Carica papaya HOM05D002479 ORTHO05D002675 4.6e-06 58.2 94 34.0
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 4.6e-06 58.2 91 30.8
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 4.6e-06 58.2 276 20.3
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 4.6e-06 58.2 200 28.5
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 4.6e-06 58.2 276 20.3
PSO541G3087 Papaver somniferum HOM05D000001 ORTHO05D000003 4.6e-06 58.2 296 20.3
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 6.0e-06 57.8 94 30.9
Prupe.3G233300 Prunus persica HOM05D002479 ORTHO05D002675 6.0e-06 57.8 85 35.3


User provided reference genes

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