Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.8e-82 308.1 157 100.0
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.8e-82 308.1 157 100.0
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.6e-80 302.8 157 98.1
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 3.2e-73 278.5 157 89.8
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.3e-70 268.1 157 86.0
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 3.2e-65 251.9 159 84.9
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 3.9e-63 245.0 159 80.5
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.1e-62 243.4 159 78.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 2.5e-62 242.3 159 80.5
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.6e-61 239.6 159 79.2
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.6e-61 239.6 159 79.2
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 2.8e-61 238.8 159 78.6
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 6.3e-61 237.7 159 78.6
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 8.2e-61 237.3 159 77.4
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.1e-60 236.9 157 78.3
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.8e-60 236.1 159 78.0
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.8e-60 236.1 159 78.6
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 3.1e-60 235.3 159 78.6
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.1e-60 235.0 159 77.4
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 5.3e-60 234.6 159 79.2
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.3e-58 229.9 159 76.1
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.7e-58 229.6 157 77.1
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.7e-58 229.6 157 76.4
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 2.2e-58 229.2 159 75.5
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 2.9e-58 228.8 159 75.5
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 3.8e-58 228.4 155 76.8
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.9e-57 226.1 154 76.6
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 3.2e-57 225.3 149 79.9
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 3.2e-57 225.3 157 75.2
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 4.2e-57 224.9 159 74.8
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 9.3e-57 223.8 159 74.2
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 9.3e-57 223.8 145 82.1
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 2.1e-56 222.6 157 75.2
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 7.9e-56 220.7 130 88.5
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.3e-55 219.2 174 72.4
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 3.0e-55 218.8 147 78.2
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 6.7e-55 217.6 159 74.2
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 5.7e-54 214.5 148 75.7
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 9.7e-54 213.8 156 71.2
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.8e-53 212.2 157 72.0
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 3.7e-53 211.8 157 74.5
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 8.2e-53 210.7 156 74.4
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.1e-52 210.3 156 73.7
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.4e-52 209.9 156 73.7
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.4e-52 209.9 156 73.7
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.4e-52 209.1 156 73.1
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 4.1e-52 208.4 154 72.7
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 2.0e-51 206.1 158 72.8
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.6e-51 205.7 154 72.1
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.9e-51 204.5 158 69.6
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 7.7e-51 204.1 158 69.0
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 7.7e-51 204.1 156 70.5
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.7e-50 203.0 166 68.1
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.2e-50 202.6 155 71.0
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.9e-50 202.2 155 68.4
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.8e-50 201.8 154 73.4
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.8e-50 201.8 156 67.9
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.0e-50 201.4 156 67.9
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 5.0e-50 201.4 156 68.6
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 5.0e-50 201.4 156 68.6
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.0e-50 201.4 156 68.6
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 8.5e-50 200.7 224 53.6
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-49 199.5 157 68.2
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.5e-49 199.1 157 68.2
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.2e-49 197.6 155 67.7
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 7.2e-49 197.6 155 72.3
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 7.2e-49 197.6 155 72.3
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.6e-48 196.4 155 71.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 2.1e-48 196.1 157 68.2
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.7e-48 195.7 160 66.2
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 3.6e-48 195.3 153 69.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.6e-48 194.9 157 68.8
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 4.6e-48 194.9 155 70.3
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.1e-48 194.5 155 66.5
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.1e-48 194.5 155 66.5
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.0e-47 193.7 154 68.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.3e-47 192.6 155 71.0
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.1e-47 191.4 155 65.8
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 2.6e-46 189.1 154 67.5
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.6e-46 189.1 156 66.0
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.6e-46 189.1 200 57.5
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.7e-46 188.0 155 67.1
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.3e-45 186.8 159 66.7
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.2e-45 186.0 158 62.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.8e-45 185.7 155 68.4
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 3.7e-45 185.3 157 65.6
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 4.8e-45 184.9 159 66.0
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 8.2e-45 184.1 153 67.3
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.1e-44 183.7 155 65.8
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.4e-44 183.3 148 69.6
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.8e-44 183.0 155 65.2
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.1e-44 182.2 156 64.7
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 4.1e-44 181.8 154 65.6
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 4.1e-44 181.8 156 64.1
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.2e-43 180.3 156 62.2
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 5.9e-43 177.9 157 65.0
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.0e-42 177.2 153 65.4
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 1.3e-42 176.8 156 60.9
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.7e-42 176.4 156 62.2
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.9e-41 172.9 156 61.5
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 3.2e-41 172.2 183 56.8
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.2e-41 172.2 146 67.1
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.2e-41 172.2 146 67.1
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 4.2e-41 171.8 186 55.4
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.5e-41 171.4 164 62.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 7.2e-41 171.0 155 61.9
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 7.2e-41 171.0 160 61.9
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.6e-40 168.7 155 60.6
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 3.6e-40 168.7 155 61.3
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 4.7e-40 168.3 156 63.5
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 6.1e-40 167.9 152 63.2
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.0e-39 167.2 157 63.1
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 2.3e-39 166.0 157 61.8
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.3e-39 166.0 157 56.7
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.0e-39 165.6 155 60.0
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 3.9e-39 165.2 270 42.2
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 6.7e-39 164.5 93 88.2
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.1e-38 163.7 124 71.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.4e-38 161.8 155 58.1
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 4.4e-38 161.8 93 87.1
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 4.4e-38 161.8 132 67.4
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.7e-37 158.7 140 63.6
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.7e-37 158.7 153 58.8
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 6.3e-37 157.9 153 58.2
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 6.3e-37 157.9 154 61.0
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 8.2e-37 157.5 152 58.6
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.4e-36 156.8 95 86.3
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 1.4e-36 156.8 158 54.4
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.8e-36 156.4 164 54.9
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 4.1e-36 155.2 150 58.0
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 5.3e-36 154.8 152 57.2
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 7.0e-36 154.5 116 69.8
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 9.1e-36 154.1 141 61.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.2e-35 153.7 113 70.8
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 2.6e-35 152.5 153 57.5
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 2.6e-35 152.5 153 57.5
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 2.6e-35 152.5 153 57.5
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.6e-35 152.5 152 56.6
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 5.9e-35 151.4 154 57.1
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 7.7e-35 151.0 150 57.3
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.7e-34 149.8 123 66.7
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.2e-34 149.4 102 74.5
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 2.2e-34 149.4 151 57.6
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 3.8e-34 148.7 142 61.3
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.8e-34 148.7 153 56.9
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 5.0e-34 148.3 93 77.4
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.9e-33 146.4 157 54.8
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.3e-31 139.4 120 64.2
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.5e-30 136.7 96 71.9
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.0e-30 136.3 175 49.1
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.6e-30 136.0 156 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 5.7e-30 134.8 148 56.1
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 5.7e-30 134.8 122 63.1
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 9.7e-30 134.0 102 65.7
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.3e-29 133.7 144 54.9
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 2.0e-27 126.3 93 68.8
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 2.0e-27 126.3 156 50.6
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.0e-26 124.0 126 55.6
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.0e-26 124.0 94 67.0
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.5e-25 119.4 92 65.2
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 2.8e-21 105.9 144 48.6
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.8e-21 105.9 168 43.5
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 7.0e-20 101.3 86 66.3
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.3e-18 96.3 89 62.9
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 6.5e-18 94.7 75 60.0
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 5.5e-17 91.7 85 51.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.2e-17 91.3 89 58.4
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 2.1e-16 89.7 61 73.8
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 2.8e-16 89.4 86 61.6
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 4.4e-14 82.0 89 52.8
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.8e-13 79.3 57 66.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 7.0e-12 74.7 62 59.7
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-11 73.9 57 63.2
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 2.5e-09 66.2 86 45.3
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.3e-09 65.9 66 48.5
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 1.2e-08 63.9 41 75.6
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 3.6e-08 62.4 89 48.3
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 4.7e-08 62.0 63 60.3
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.0e-07 59.3 76 43.4
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.5e-06 54.7 94 41.5


User provided reference genes

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