Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G193350 Gossypium hirsutum HOM05D000274 ORTHO05D047007 1.1e-49 199.5 93 100.0
Gorai.004G203600 Gossypium raimondii HOM05D000274 ORTHO05D047007 1.1e-49 199.5 93 100.0
Gohir.A08G174700 Gossypium hirsutum HOM05D000274 ORTHO05D006767 3.4e-30 134.8 68 94.1
Thecc.03G263300 Theobroma cacao HOM05D000274 ORTHO05D006767 5.8e-30 134.0 68 91.2
Gohir.A12G222000 Gossypium hirsutum HOM05D000274 ORTHO05D006767 1.7e-29 132.5 68 89.7
Gohir.D12G224500 Gossypium hirsutum HOM05D000274 ORTHO05D006767 1.4e-28 129.4 68 88.2
Gorai.008G240600 Gossypium raimondii HOM05D000274 ORTHO05D006767 1.4e-28 129.4 68 88.2
Sabra01G0089000 Salix brachista HOM05D000274 ORTHO05D006767 3.1e-23 111.7 68 76.5
Manes.01G071900 Manihot esculenta HOM05D000274 ORTHO05D006767 4.0e-23 111.3 68 76.5
Duzib068G0042 Durio zibethinus HOM05D000274 ORTHO05D006767 1.5e-22 109.4 68 76.5
Potri.001G115900 Populus trichocarpa HOM05D000274 ORTHO05D006767 2.0e-22 109.0 68 75.0
Duzib084G0200 Durio zibethinus HOM05D000274 ORTHO05D006767 7.1e-20 100.5 68 75.0
Ciclev10021577m.g Citrus clementina HOM05D000274 ORTHO05D006767 1.0e-18 96.7 68 61.8
Cpa.g.sc29.73 Carica papaya HOM05D000274 ORTHO05D006767 3.3e-17 91.7 91 51.6
Atru.chr9.1459 Acer truncatum HOM05D000274 ORTHO05D006767 2.8e-16 88.6 68 63.2
THA.LOC104818350 Tarenaya hassleriana HOM05D000274 ORTHO05D006767 1.4e-15 86.3 68 61.8
TWI81G0936 Tripterygium wilfordii HOM05D000274 ORTHO05D006767 1.8e-15 85.9 68 63.2
CANSAT21G0895 Cannabis sativa HOM05D000274 ORTHO05D006767 2.4e-15 85.5 74 55.4
Eucgr.E00484 Eucalyptus grandis HOM05D000274 ORTHO05D006767 3.8e-13 78.2 70 57.1
PGR004G1395 Punica granatum HOM05D000274 ORTHO05D006767 3.8e-13 78.2 70 54.3
GSVIVG01019939001 Vitis vinifera HOM05D000274 ORTHO05D006767 3.8e-13 78.2 62 58.1
Prupe.5G081300 Prunus persica HOM05D000274 ORTHO05D006767 3.2e-12 75.1 57 59.6
Cfa012030 Carpinus fangiana HOM05D000274 ORTHO05D006767 9.3e-12 73.6 62 59.7
Nitab4.5_0005241g0020 Nicotiana tabacum HOM05D000274 ORTHO05D006767 9.3e-12 73.6 66 48.5
Thhalv10008424m.g Eutrema salsugineum HOM05D000274 ORTHO05D006767 1.6e-11 72.8 70 58.6
AT1G12410 Arabidopsis thaliana HOM05D000274 ORTHO05D006767 3.5e-11 71.6 70 57.1
Lalb_Chr05g0225301 Lupinus albus HOM05D000274 ORTHO05D006767 3.5e-11 71.6 57 57.9
AL1G23740 Arabidopsis lyrata HOM05D000274 ORTHO05D006767 4.6e-11 71.2 70 55.7
Carub.0001s1206 Capsella rubella HOM05D000274 ORTHO05D006767 6.0e-11 70.9 70 55.7
QL12p015358 Quercus lobata HOM05D000274 ORTHO05D006767 6.0e-11 70.9 58 62.1
CARHR012700 Cardamine hirsuta HOM05D000274 ORTHO05D006767 7.8e-11 70.5 70 55.7
MD04G1077600 Malus domestica HOM05D000274 ORTHO05D006767 7.8e-11 70.5 57 56.1
Sp1g11010 Schrenkiella parvula HOM05D000274 ORTHO05D006767 1.3e-10 69.7 70 57.1
CiPaw.12G103600 Carya illinoinensis HOM05D000274 ORTHO05D006767 2.3e-10 68.9 74 51.4
Dinv37752 Davidia involucrata HOM05D000274 ORTHO05D006767 2.3e-10 68.9 62 50.0
EL10Ac5g12635 Beta vulgaris HOM05D000274 ORTHO05D006767 3.0e-10 68.6 62 51.6
CSS0003342 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 3.9e-10 68.2 56 55.4
BcaC07g41702 Brassica carinata HOM05D000274 ORTHO05D006767 5.1e-10 67.8 70 55.7
Aa31LG1G2210 Aethionema arabicum HOM05D000274 ORTHO05D006767 6.6e-10 67.4 70 52.9
Oeu025551.1 Olea europaea HOM05D000274 ORTHO05D006767 6.6e-10 67.4 60 46.7
TAR375G0199 Trochodendron aralioides HOM05D000274 ORTHO05D006767 8.7e-10 67.0 57 54.4
Lalb_Chr16g0389571 Lupinus albus HOM05D000274 ORTHO05D006767 1.1e-09 66.6 70 48.6
Peaxi162Scf00271g00031 Petunia axillaris HOM05D000274 ORTHO05D006767 1.5e-09 66.2 56 51.8
Sed0011540 Sechium edule HOM05D000274 ORTHO05D006767 1.5e-09 66.2 57 52.6
BraA09t41734Z Brassica rapa HOM05D000274 ORTHO05D006767 1.9e-09 65.9 70 54.3
PGSC0003DMG400003952 Solanum tuberosum HOM05D000274 ORTHO05D006767 1.9e-09 65.9 62 46.8
CSS0046106 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 2.5e-09 65.5 80 46.2
Migut.A00848 Erythranthe guttata HOM05D000274 ORTHO05D006767 3.3e-09 65.1 74 41.9
Hund14664 Selenicereus undatus HOM05D000274 ORTHO05D006767 3.3e-09 65.1 59 52.5
DCAR_008450 Daucus carota HOM05D000274 ORTHO05D006767 4.3e-09 64.7 79 41.8
arahy.Tifrunner.gnm1.ann1.6QW8CL Arachis hypogaea HOM05D000274 ORTHO05D006767 5.6e-09 64.3 56 51.8
Nn1g01221 Nelumbo nucifera HOM05D000274 ORTHO05D006767 5.6e-09 64.3 57 52.6
Lj4g0011320 Lotus japonicus HOM05D000274 ORTHO05D006767 1.3e-08 63.2 57 47.4
BolC5t29821H Brassica oleracea HOM05D000274 ORTHO05D006767 2.1e-08 62.4 70 54.3
unitig_52.g17499 Utricularia gibba HOM05D000274 ORTHO05D006767 2.1e-08 62.4 74 41.9
Solyc08g079620.3 Solanum lycopersicum HOM05D000274 ORTHO05D006767 2.8e-08 62.0 62 43.5
Sopen08g027970 Solanum pennellii HOM05D000274 ORTHO05D006767 2.8e-08 62.0 62 43.5
arahy.Tifrunner.gnm1.ann1.6KUP6V Arachis hypogaea HOM05D000274 ORTHO05D006767 4.8e-08 61.2 56 50.0
arahy.Tifrunner.gnm1.ann1.U20N0A Arachis hypogaea HOM05D000274 ORTHO05D006767 4.8e-08 61.2 70 45.7
MBI04_g35280_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D006767 4.8e-08 61.2 58 50.0
SalBow6G2249 Salvia bowleyana HOM05D000274 ORTHO05D006767 4.8e-08 61.2 57 47.4
CsaV3_5G003660 Cucumis sativus L. HOM05D000274 ORTHO05D006767 6.2e-08 60.8 57 49.1
Glyma.17G136100 Glycine max HOM05D000274 ORTHO05D006767 8.1e-08 60.5 57 45.6
ClCG01G003570 Citrullus lanatus HOM05D000274 ORTHO05D006767 1.1e-07 60.1 57 50.9
Sc01g0009140 Simmondsia chinensis HOM05D000274 ORTHO05D006767 1.8e-07 59.3 57 49.1
VMungo0251G1701 Vigna mungo HOM05D000274 ORTHO05D006767 1.8e-07 59.3 56 46.4
CSS0013233 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 2.4e-07 58.9 69 43.5
Nitab4.5_0000439g0150 Nicotiana tabacum HOM05D000274 ORTHO05D006767 3.1e-07 58.5 67 41.8
MSTRG.1931 Avicennia marina HOM05D000274 ORTHO05D006767 6.9e-07 57.4 74 39.2
PSO063G2753 Papaver somniferum HOM05D000274 ORTHO05D006767 9.0e-07 57.0 50 52.0
PSO782G2278 Papaver somniferum HOM05D000274 ORTHO05D006767 1.2e-06 56.6 50 52.0
A06p09220 Brassica napus HOM05D000274 ORTHO05D006767 1.5e-06 56.2 61 52.5
HanXRQChr17g0550501 Helianthus annuus HOM05D000274 ORTHO05D006767 2.0e-06 55.8 69 43.5
BolC8t52281H Brassica oleracea HOM05D000274 ORTHO05D006767 3.4e-06 55.1 61 50.8
CAN.G630.55 Capsicum annuum HOM05D000274 ORTHO05D006767 3.4e-06 55.1 67 41.8
Cc08_g13400 Coffea canephora HOM05D000274 ORTHO05D006767 3.4e-06 55.1 63 36.5
BraA06t24108Z Brassica rapa HOM05D000274 ORTHO05D006767 4.4e-06 54.7 61 50.8
ECA246G0641 Erigeron canadensis HOM05D000274 ORTHO05D006767 4.4e-06 54.7 69 42.0
Lsat_1_v5_gn_3_3401 Lactuca sativa HOM05D000274 ORTHO05D006767 5.8e-06 54.3 75 44.0
Glyma.05G053600 Glycine max HOM05D000274 ORTHO05D006767 7.6e-06 53.9 54 42.6
Phvul.003G215800 Phaseolus vulgaris HOM05D000274 ORTHO05D006767 9.9e-06 53.5 73 43.8
RcHm_v2.0_Chr7g0201061 Rosa chinensis HOM05D000274 ORTHO05D006767 9.9e-06 53.5 67 38.8


User provided reference genes

Program Settings