Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.8e-199 698.0 356 100.0
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.5e-198 695.3 356 99.7
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.8e-196 686.8 356 97.8
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.3e-175 619.8 348 91.1
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 2.5e-174 615.5 348 90.2
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 7.3e-174 614.0 348 89.9
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 9.2e-169 597.0 348 87.9
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.0e-168 594.3 348 87.6
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.9e-166 589.3 377 81.7
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 9.5e-166 587.0 358 84.4
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 5.2e-164 581.3 352 83.5
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 8.9e-164 580.5 352 83.2
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 2.0e-163 579.3 324 88.9
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 9.9e-163 577.0 357 82.4
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 9.9e-163 577.0 360 83.1
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.1e-161 573.5 325 88.3
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.4e-161 573.2 351 84.0
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 4.1e-161 571.6 332 86.4
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 5.4e-161 571.2 341 84.5
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 5.4e-161 571.2 345 83.2
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 5.4e-161 571.2 334 85.0
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 7.1e-161 570.9 340 84.7
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 7.1e-161 570.9 349 83.7
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 9.2e-161 570.5 354 81.1
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 9.2e-161 570.5 327 86.9
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.6e-160 569.7 345 83.5
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.6e-160 569.7 334 85.6
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 3.5e-160 568.5 340 83.8
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 3.5e-160 568.5 343 84.3
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 6.0e-160 567.8 326 87.1
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 7.8e-160 567.4 346 82.4
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.0e-159 567.0 328 85.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.0e-159 567.0 347 82.1
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.0e-159 567.0 337 84.6
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.0e-159 567.0 323 87.3
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.3e-159 566.6 330 85.5
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 3.0e-159 565.5 328 85.4
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 3.0e-159 565.5 330 85.2
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.0e-159 565.5 323 86.7
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.9e-159 565.1 337 84.3
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 3.9e-159 565.1 340 83.8
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 3.9e-159 565.1 343 82.8
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 6.6e-159 564.3 328 85.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 6.6e-159 564.3 328 85.4
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 6.6e-159 564.3 328 85.4
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 6.6e-159 564.3 328 85.4
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 6.6e-159 564.3 328 85.4
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 6.6e-159 564.3 352 81.8
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.9e-158 562.8 322 87.3
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.9e-158 562.8 327 85.3
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.5e-158 562.4 338 83.7
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.5e-158 562.4 374 78.9
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 2.5e-158 562.4 325 85.2
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.3e-158 562.0 337 83.4
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 4.3e-158 561.6 344 82.6
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 7.3e-158 560.8 326 86.5
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 7.3e-158 560.8 337 83.7
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-157 560.1 348 82.2
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.6e-157 559.7 343 82.5
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.6e-157 559.7 348 80.7
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 2.1e-157 559.3 350 81.4
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.8e-157 558.9 350 81.4
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 3.6e-157 558.5 339 81.7
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 3.6e-157 558.5 340 82.6
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 3.6e-157 558.5 340 82.6
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 3.6e-157 558.5 338 82.8
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 6.2e-157 557.8 340 83.2
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 6.2e-157 557.8 340 83.5
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 8.1e-157 557.4 340 82.6
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.1e-156 557.0 340 82.9
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.4e-156 556.6 344 81.7
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-156 556.2 350 81.1
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-156 556.2 350 81.1
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.8e-156 556.2 331 83.1
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-156 555.8 350 80.9
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.1e-156 555.4 333 82.6
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 6.8e-156 554.3 326 84.4
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 6.8e-156 554.3 319 85.6
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.0e-155 552.7 350 81.7
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 3.4e-155 552.0 343 82.5
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.2e-154 549.3 367 77.9
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 4.9e-154 548.1 346 82.4
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 6.4e-154 547.7 346 80.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.4e-154 547.7 319 85.0
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-153 547.0 342 82.2
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.9e-153 546.2 328 84.1
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.4e-153 545.8 350 79.4
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 2.4e-153 545.8 335 82.1
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 7.1e-153 544.3 344 81.4
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-152 543.5 333 81.7
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.0e-151 540.4 322 85.1
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.3e-151 540.0 343 80.2
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 3.9e-151 538.5 366 76.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.3e-150 535.0 323 84.2
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.1e-149 532.7 369 76.4
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 2.1e-149 532.7 327 81.0
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.8e-149 532.3 346 78.3
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.2e-149 531.2 323 81.7
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 8.1e-149 530.8 347 79.0
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.1e-149 530.8 338 82.0
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 7.6e-147 524.2 296 87.2
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 9.9e-147 523.9 324 79.3
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 2.9e-146 522.3 294 88.4
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.0e-144 514.6 383 70.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.8e-141 505.8 392 70.2
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.9e-138 495.7 281 88.6
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.9e-138 495.7 352 74.1
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.4e-137 493.4 320 76.9
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.2e-137 492.3 319 74.3
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 7.1e-137 491.1 335 75.5
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 9.3e-137 490.7 344 73.3
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.8e-135 486.5 378 67.2
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.5e-131 473.4 344 68.0
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 6.0e-128 461.5 356 70.2
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.8e-127 459.9 324 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.5e-126 456.8 327 68.5
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 4.3e-126 455.3 327 68.2
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.7e-126 454.9 348 65.2
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.4e-126 454.5 261 88.9
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 3.1e-124 449.1 355 68.2
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.6e-123 446.0 258 86.4
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 8.4e-122 441.0 296 78.0
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 9.3e-121 437.6 341 64.8
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 9.3e-121 437.6 300 72.7
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.3e-119 433.0 366 63.4
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 1.5e-118 430.3 323 64.1
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.5e-115 420.2 309 65.0
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 8.8e-111 404.4 248 81.0
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 2.0e-110 403.3 237 85.7
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 5.7e-110 401.7 333 64.6
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 5.7e-110 401.7 336 63.1
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.3e-109 400.6 300 66.0
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.2e-107 394.0 240 83.3
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.0e-106 391.0 274 68.6
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.2e-106 389.8 237 82.3
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-104 383.6 362 57.7
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.9e-104 381.3 275 71.3
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.7e-103 378.3 247 76.9
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.3e-101 374.0 361 58.4
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.8e-100 370.2 337 56.1
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.8e-98 362.5 232 78.0
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-97 360.5 238 77.3
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 4.4e-86 322.4 200 82.0
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.4e-76 290.8 285 58.6
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 2.4e-76 290.0 203 77.3
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 8.6e-66 255.0 299 48.5
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 4.1e-60 236.1 159 74.8
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.1e-57 228.0 161 67.1
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.4e-55 221.1 255 53.3
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.1e-55 219.9 130 81.5
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 4.9e-53 212.6 130 80.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 9.2e-52 208.4 352 42.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.7e-50 204.1 114 86.0
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 2.4e-44 183.7 236 39.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 5.6e-41 172.6 208 46.6
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.2e-40 169.1 104 77.9
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.2e-37 160.6 88 85.2
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 8.4e-37 158.7 93 77.4
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.5e-35 153.3 96 76.0
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 5.1e-34 149.4 92 76.1
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.1e-33 148.3 96 79.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 9.6e-33 145.2 110 72.7
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 9.0e-31 138.7 76 88.2
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.9e-29 133.7 189 50.3
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 5.4e-28 129.4 86 70.9
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.4e-20 104.8 66 75.8
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 9.3e-20 102.1 77 63.6
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 2.7e-19 100.5 81 60.5
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.6e-19 99.8 73 60.3
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.8e-18 97.8 57 89.5
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 5.1e-18 96.3 75 64.0
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.1e-17 95.1 62 77.4
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 3.7e-16 90.1 78 70.5
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 4.8e-08 63.2 47 66.0


User provided reference genes

Program Settings