Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 3.1e-40 167.9 79 100.0
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-37 158.3 74 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 6.0e-36 153.7 73 98.6
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.7e-35 152.1 74 95.9
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.5e-34 149.1 78 92.3
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-34 148.3 78 91.0
Gohir.D05G139233 Gossypium hirsutum HOM05D004252 ORTHO05D002201 2.9e-14 81.6 57 71.9
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 3.8e-14 81.3 39 89.7
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 4.9e-14 80.9 34 100.0
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 8.4e-14 80.1 34 97.1
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 1.1e-13 79.7 35 97.1
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 1.1e-13 79.7 34 97.1
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 1.4e-13 79.3 34 97.1
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 1.4e-13 79.3 34 94.1
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 1.4e-13 79.3 34 97.1
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.9e-13 79.0 34 97.1
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.9e-13 79.0 34 97.1
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 1.9e-13 79.0 34 97.1
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 1.9e-13 79.0 34 97.1
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 1.9e-13 79.0 47 70.2
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 94.1
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 2.4e-13 78.6 34 97.1
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 3.2e-13 78.2 34 97.1
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 3.2e-13 78.2 34 97.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 3.2e-13 78.2 34 94.1
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 4.2e-13 77.8 34 94.1
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 4.2e-13 77.8 34 94.1
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 5.4e-13 77.4 34 94.1
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 5.4e-13 77.4 34 97.1
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 5.4e-13 77.4 34 94.1
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 5.4e-13 77.4 34 94.1
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 5.4e-13 77.4 34 94.1
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 5.4e-13 77.4 34 91.2
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 5.4e-13 77.4 34 94.1
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 9.3e-13 76.6 34 94.1
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 9.3e-13 76.6 34 91.2
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 9.3e-13 76.6 34 91.2
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 9.3e-13 76.6 34 91.2
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 1.2e-12 76.3 34 94.1
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 1.2e-12 76.3 34 94.1
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 1.2e-12 76.3 34 94.1
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 1.2e-12 76.3 34 88.2
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 1.6e-12 75.9 35 91.4
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 2.1e-12 75.5 39 84.6
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 2.1e-12 75.5 34 88.2
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 2.1e-12 75.5 34 91.2
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 4.6e-12 74.3 32 96.9
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 4.6e-12 74.3 32 96.9
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 6.0e-12 73.9 35 94.3
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 7.9e-12 73.6 34 88.2
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 7.9e-12 73.6 34 88.2
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 7.9e-12 73.6 31 93.5
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 1.3e-11 72.8 34 85.3
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 1.3e-11 72.8 34 85.3
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 2.3e-11 72.0 34 91.2
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 6.7e-11 70.5 31 83.9
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 6.7e-11 70.5 34 85.3
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 7.4e-10 67.0 30 86.7
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 1.6e-09 65.9 31 80.6
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 3.7e-09 64.7 38 68.4
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 8.1e-09 63.5 34 73.5
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 1.8e-08 62.4 31 77.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 1.2e-07 59.7 23 100.0
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.5e-07 59.3 26 84.6
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.5e-07 59.3 26 84.6
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 1.5e-07 59.3 34 67.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 5.8e-07 57.4 31 74.2
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 9.9e-07 56.6 35 65.7
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.2e-06 55.5 36 61.1
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 8.4e-06 53.5 27 85.2


User provided reference genes

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