Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 6.7e-257 890.2 456 100.0
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.4e-254 881.7 456 99.1
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.3e-254 880.6 456 98.9
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.3e-220 769.6 465 87.3
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 7.6e-208 727.2 461 83.3
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 8.7e-196 687.2 473 76.7
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 7.3e-195 684.1 470 76.4
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 9.6e-195 683.7 473 76.5
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 5.3e-193 677.9 467 76.7
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 9.0e-193 677.2 472 74.8
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.2e-192 676.8 469 76.3
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 5.8e-192 674.5 490 73.5
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 1.1e-190 670.2 476 74.6
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.4e-190 669.8 476 74.6
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 1.4e-190 669.8 472 74.8
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.4e-190 669.1 475 74.9
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 2.1e-189 666.0 472 73.3
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.7e-189 665.6 468 73.9
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.7e-188 661.0 478 72.0
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.5e-187 659.8 472 72.5
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 4.3e-187 658.3 465 75.9
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.3e-186 656.8 398 86.9
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 8.1e-186 654.1 464 73.7
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 8.1e-186 654.1 486 72.0
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 6.9e-185 651.0 466 74.9
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.2e-184 650.2 464 74.1
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 5.8e-184 647.9 465 74.0
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 9.9e-184 647.1 478 72.8
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.2e-183 646.0 470 72.6
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 4.9e-183 644.8 465 73.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 4.9e-183 644.8 470 73.2
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 8.4e-183 644.0 469 74.2
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.4e-182 643.3 472 72.9
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.4e-182 643.3 472 72.9
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.4e-182 643.3 478 72.8
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.3e-182 640.6 481 73.0
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.6e-181 639.8 468 70.7
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.6e-181 639.8 473 72.1
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.5e-181 638.6 468 70.7
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 3.5e-181 638.6 473 72.5
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 4.6e-181 638.3 467 75.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.0e-181 637.9 463 71.5
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.0e-180 637.1 473 70.6
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.3e-180 636.7 462 74.0
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.3e-180 636.7 474 73.2
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.3e-180 636.7 480 72.1
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.3e-180 636.7 513 69.8
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 2.3e-180 636.0 468 72.6
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.9e-180 635.2 491 70.3
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.9e-180 635.2 480 71.9
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.5e-179 633.3 480 71.2
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.5e-179 632.5 500 68.0
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 5.6e-179 631.3 450 75.3
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 9.6e-179 630.6 471 72.4
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 2.1e-178 629.4 403 80.6
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.8e-177 626.3 468 72.6
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.4e-177 625.9 480 70.8
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 4.0e-177 625.2 470 71.9
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 5.3e-177 624.8 470 71.9
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.6e-176 622.5 524 66.4
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.6e-176 622.5 470 69.6
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 5.8e-176 621.3 469 71.2
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 5.8e-176 621.3 465 70.3
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.0e-175 620.5 469 70.6
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.0e-175 620.5 467 71.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.0e-175 620.5 479 69.1
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-175 620.2 472 70.8
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.9e-175 618.2 468 70.7
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.9e-175 618.2 506 67.2
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 6.5e-175 617.8 468 72.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.4e-174 616.7 469 70.4
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.4e-174 616.7 467 69.0
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 4.2e-174 615.1 467 70.2
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 4.2e-174 615.1 467 70.2
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.5e-174 614.8 461 69.4
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.2e-173 613.6 469 70.4
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 2.7e-173 612.5 469 69.5
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 4.6e-173 611.7 467 69.4
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.3e-172 609.4 467 70.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 1.1e-171 607.1 464 71.8
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.9e-171 606.3 469 69.3
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 3.3e-171 605.5 467 69.8
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 3.3e-171 605.5 468 69.2
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 3.3e-171 605.5 468 69.2
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.3e-170 603.6 474 68.6
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.8e-170 602.4 472 69.1
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.8e-170 602.4 385 77.9
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.8e-170 601.7 506 65.8
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.1e-169 600.5 467 69.0
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 5.3e-169 598.2 370 81.4
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.5e-168 596.7 459 69.9
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-168 596.7 463 68.5
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 2.0e-168 596.3 430 74.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.0e-167 594.0 467 68.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.7e-167 593.2 366 82.0
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.1e-166 590.5 461 68.3
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.4e-166 590.1 457 69.6
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 2.5e-166 589.3 523 63.1
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 3.2e-166 589.0 479 66.6
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.2e-166 589.0 479 66.6
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.2e-166 589.0 470 67.9
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.7e-165 585.9 528 61.0
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.9e-164 582.0 470 66.4
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.5e-163 579.3 462 68.8
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 2.5e-163 579.3 404 75.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 3.3e-163 578.9 330 85.2
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.3e-162 577.0 458 68.1
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 8.2e-162 574.3 474 66.2
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.4e-161 572.8 467 66.6
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 4.1e-161 572.0 494 63.6
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 5.3e-161 571.6 457 67.4
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.5e-160 570.1 457 67.2
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 8.5e-159 564.3 466 67.2
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.5e-158 562.8 444 67.8
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 5.5e-158 561.6 484 65.1
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 7.2e-158 561.2 482 64.7
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.6e-157 558.9 487 63.4
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.8e-153 546.6 454 65.2
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.9e-151 539.3 416 68.0
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 3.8e-151 538.9 437 66.6
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 8.5e-151 537.7 462 64.3
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 5.5e-150 535.0 466 64.4
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 7.2e-150 534.6 461 61.4
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.7e-148 528.1 500 60.4
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-146 523.9 286 88.5
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.1e-145 520.8 279 88.5
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.5e-142 509.6 497 57.1
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.4e-140 503.8 332 73.2
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.4e-137 493.0 459 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.5e-134 483.8 325 72.0
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 2.7e-133 479.6 335 73.1
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.0e-132 475.7 401 61.8
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.2e-132 475.3 471 56.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.0e-127 461.1 391 65.7
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.6e-125 453.8 439 58.1
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.0e-125 451.4 563 51.5
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 4.0e-124 449.1 472 56.8
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.3e-122 441.8 353 64.9
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-117 427.6 432 56.0
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.0e-116 424.5 529 46.9
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.4e-105 386.7 390 57.2
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.3e-102 375.9 286 67.1
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 6.8e-100 368.6 332 56.6
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 3.0e-95 353.2 465 44.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.2e-80 304.7 463 44.3
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 9.0e-76 288.5 256 57.0
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 7.1e-65 252.3 469 42.4
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 3.0e-55 220.3 372 37.6
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.1e-44 185.3 248 50.0
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.4e-39 168.3 367 36.5
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.2e-37 161.0 120 70.0
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 3.9e-31 140.2 162 51.2
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.7e-29 133.7 197 46.2
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 6.3e-29 132.9 81 77.8
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 2.6e-22 110.9 108 59.3
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 3.3e-22 110.5 136 50.0
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 5.3e-20 103.2 200 44.0
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.7e-19 100.9 189 42.3
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 3.4e-06 57.4 187 35.8


User provided reference genes

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