Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 3.9e-198 694.5 331 100.0
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.6e-146 523.1 423 68.1
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 5.3e-110 401.7 440 53.2
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.8e-108 395.6 437 53.1
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 3.8e-108 395.6 443 52.4
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 8.4e-108 394.4 442 53.6
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 8.4e-108 394.4 442 53.4
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 1.1e-107 394.0 442 51.4
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.1e-107 394.0 437 52.9
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 1.1e-107 394.0 437 52.9
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 1.9e-107 393.3 445 51.9
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.9e-107 393.3 442 51.6
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 5.5e-107 391.7 445 52.1
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 9.3e-107 391.0 443 52.1
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 1.2e-106 390.6 443 51.7
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 1.6e-106 390.2 441 51.5
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 2.7e-106 389.4 437 52.6
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 3.5e-106 389.0 442 51.8
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 3.5e-106 389.0 442 52.0
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 4.6e-106 388.7 437 52.2
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 4.6e-106 388.7 442 52.0
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 6.0e-106 388.3 443 51.5
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 7.9e-106 387.9 442 51.6
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 7.9e-106 387.9 437 51.0
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 7.9e-106 387.9 442 50.9
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.0e-105 387.5 437 50.8
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 1.0e-105 387.5 437 52.9
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 3.0e-105 386.0 437 52.2
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 3.0e-105 386.0 439 50.3
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 3.9e-105 385.6 437 51.9
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 3.9e-105 385.6 443 51.7
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 3.9e-105 385.6 442 51.4
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 3.9e-105 385.6 438 50.0
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 6.7e-105 384.8 442 51.4
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.1e-104 384.0 442 51.4
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.1e-104 384.0 427 52.5
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 1.5e-104 383.6 445 51.5
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.9e-104 383.3 442 51.6
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 1.9e-104 383.3 443 50.6
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 2.5e-104 382.9 442 50.9
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 2.5e-104 382.9 438 50.0
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 2.5e-104 382.9 443 51.9
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 2.5e-104 382.9 442 51.6
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 3.3e-104 382.5 428 51.9
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 3.3e-104 382.5 451 51.4
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 3.3e-104 382.5 442 51.1
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 4.3e-104 382.1 442 51.6
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 4.3e-104 382.1 442 51.4
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 5.7e-104 381.7 454 50.4
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 7.4e-104 381.3 437 51.9
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 9.6e-104 380.9 445 51.0
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 1.3e-103 380.6 432 52.8
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 1.6e-103 380.2 437 50.1
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 1.6e-103 380.2 440 50.2
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 2.1e-103 379.8 441 51.2
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 3.7e-103 379.0 445 49.9
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 3.7e-103 379.0 445 50.1
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 4.8e-103 378.6 437 51.0
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 8.2e-103 377.9 454 49.8
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 8.2e-103 377.9 442 50.2
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 8.2e-103 377.9 445 50.6
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 1.1e-102 377.5 439 50.8
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 1.4e-102 377.1 441 50.8
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.8e-102 376.7 438 50.9
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.8e-102 376.7 437 51.3
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 1.8e-102 376.7 442 50.9
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 2.4e-102 376.3 441 50.6
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 4.1e-102 375.6 437 51.0
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 4.1e-102 375.6 442 50.0
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 4.1e-102 375.6 443 51.2
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 5.3e-102 375.2 418 51.4
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 5.3e-102 375.2 461 48.6
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 6.9e-102 374.8 437 50.8
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 6.9e-102 374.8 445 50.8
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 9.0e-102 374.4 442 50.5
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 1.2e-101 374.0 439 49.9
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 2.0e-101 373.2 462 47.4
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 3.4e-101 372.5 408 51.7
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 5.9e-101 371.7 450 48.4
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 5.9e-101 371.7 437 50.6
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 2.2e-100 369.8 439 48.7
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 2.9e-100 369.4 433 51.0
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 6.5e-100 368.2 456 48.0
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 1.1e-99 367.5 445 49.2
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 1.4e-99 367.1 444 48.0
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 1.9e-99 366.7 437 49.0
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 4.2e-99 365.5 437 49.4
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 4.2e-99 365.5 432 50.9
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 7.2e-99 364.8 437 49.0
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 7.2e-99 364.8 442 49.1
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 9.3e-99 364.4 478 47.1
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 2.7e-98 362.8 438 48.9
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 3.5e-98 362.5 445 48.5
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 3.5e-98 362.5 437 49.7
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 4.6e-98 362.1 437 49.0
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 4.6e-98 362.1 437 47.6
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 6.1e-98 361.7 442 49.8
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 7.9e-98 361.3 467 47.8
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 1.0e-97 360.9 442 48.9
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 6.7e-97 358.2 440 47.5
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 2.5e-96 356.3 514 43.6
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 5.7e-96 355.1 405 48.1
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 2.2e-95 353.2 412 50.0
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 2.2e-95 353.2 437 47.6
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.1e-94 349.4 237 76.8
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 7.7e-93 344.7 418 49.0
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 2.2e-92 343.2 408 51.0
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 5.5e-91 338.6 428 45.8
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 3.6e-90 335.9 438 45.7
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 6.3e-87 325.1 443 46.3
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 6.9e-86 321.6 437 43.2
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 6.5e-84 315.1 383 49.9
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 5.7e-80 302.0 238 64.3
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 5.7e-80 302.0 312 54.5
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 7.4e-80 301.6 238 64.3
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 3.7e-79 299.3 237 65.0
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 2.6e-77 293.1 240 62.9
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 5.9e-77 292.0 238 62.2
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 3.8e-76 289.3 182 75.8
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 5.0e-76 288.9 381 47.0
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 8.5e-76 288.1 408 41.2
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 3.2e-75 286.2 184 73.4
vmacro04976 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 4.2e-75 285.8 202 68.8
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 8.0e-74 281.6 173 76.9
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.8e-73 280.4 184 75.0
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 4.0e-73 279.3 322 49.4
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 3.3e-72 276.2 172 76.2
Psat6g063440 Pisum sativum HOM05D004351 ORTHO05D005196 5.7e-72 275.4 174 74.1
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 3.7e-71 272.7 378 46.3
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 4.1e-70 269.2 423 38.1
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 1.3e-68 264.2 433 39.0
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 1.2e-58 231.1 153 72.5
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 1.8e-57 227.3 160 68.8
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 8.0e-50 201.8 413 33.7
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 1.8e-49 200.7 416 32.7
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 1.4e-38 164.5 108 72.2
Haze_26934 Corylus avellana HOM05D004351 ORTHO05D005196 1.5e-35 154.5 416 28.4
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 5.4e-30 136.0 193 45.1
CBR_g36941 Chara braunii HOM05D004351 ORTHO05D005196 1.2e-29 134.8 89 66.3
PSO211G0001 Papaver somniferum HOM05D004351 ORTHO05D005196 8.6e-28 128.6 226 41.2
PSO384G0035 Papaver somniferum HOM05D004351 ORTHO05D005196 8.6e-28 128.6 226 41.2
Psat2g075720 Pisum sativum HOM05D000058 ORTHO05D002699 4.0e-25 119.8 81 66.7
Cc00_g05730 Coffea canephora HOM05D004351 ORTHO05D005196 1.7e-23 114.4 112 56.2
Rhsim13G0210400 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.7e-23 114.4 108 53.7
Cc00_g05710 Coffea canephora HOM05D004351 ORTHO05D005196 3.8e-23 113.2 113 55.8
Cpa.g.sc34.179 Carica papaya HOM05D004351 ORTHO05D005196 3.2e-22 110.2 108 55.6
vmacro04977 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 5.4e-22 109.4 113 53.1
CANSAT54G0522 Cannabis sativa HOM05D004351 ORTHO05D005196 2.7e-21 107.1 98 59.2
Psat2g075680 Pisum sativum HOM05D004351 ORTHO05D005196 2.5e-19 100.5 60 73.3
CSS0045717 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 7.3e-19 99.0 114 50.0
MELO3C031085.2 Cucumis melo HOM05D004351 ORTHO05D005196 3.4e-16 90.1 178 34.8
CBR_g36942 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-09 65.5 87 48.3
QL03p008751 Quercus lobata HOM05D004351 ORTHO05D005196 2.0e-08 64.3 35 82.9
QL05p067737 Quercus lobata HOM05D040500 ORTHO05D337860 1.7e-07 61.2 149 33.6
QL06p042225 Quercus lobata HOM05D004351 ORTHO05D005196 2.2e-07 60.8 35 77.1
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 3.8e-07 60.1 172 30.2
QL03p046191 Quercus lobata HOM05D040500 ORTHO05D338192 1.4e-06 58.2 119 37.8
arahy.Tifrunner.gnm1.ann1.FI1QHS Arachis hypogaea HOM05D004351 ORTHO05D005196 4.2e-06 56.6 76 46.1


User provided reference genes

Program Settings