Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 8.8e-54 213.4 109 100.0
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.9e-50 200.7 109 95.4
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.6e-23 111.7 69 85.5
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.6e-23 111.7 69 85.5
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.6e-23 111.7 69 85.5
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 3.7e-20 101.7 69 75.4
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.4e-19 99.8 69 73.9
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 2.7e-18 95.5 69 71.0
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 3.5e-18 95.1 69 72.5
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.5e-18 94.7 90 62.2
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.3e-17 92.4 90 61.1
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 2.5e-16 89.0 60 73.3
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.3e-16 88.6 101 52.5
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 5.6e-16 87.8 94 56.4
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 9.5e-16 87.0 94 55.3
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.2e-15 86.7 71 64.8
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.2e-15 86.7 71 64.8
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.6e-15 86.3 71 64.8
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.6e-15 86.3 60 73.3
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.6e-15 85.1 60 75.0
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.0e-14 83.6 86 57.0
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.0e-14 83.6 60 73.3
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.4e-14 83.2 100 51.0
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.4e-14 83.2 100 51.0
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.8e-14 82.8 60 68.3
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.8e-14 82.8 69 62.3
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.0e-14 82.0 86 57.0
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 3.0e-14 82.0 64 67.2
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 4.0e-14 81.6 64 64.1
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 5.2e-14 81.3 99 50.5
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 5.2e-14 81.3 99 50.5
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 5.2e-14 81.3 99 50.5
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 5.2e-14 81.3 65 61.5
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 5.2e-14 81.3 59 67.8
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 5.2e-14 81.3 63 63.5
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 6.8e-14 80.9 99 51.5
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 6.8e-14 80.9 99 51.5
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 6.8e-14 80.9 60 70.0
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 6.8e-14 80.9 90 52.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 6.8e-14 80.9 90 52.2
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 8.9e-14 80.5 99 50.5
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.9e-14 80.5 90 52.2
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 8.9e-14 80.5 64 65.6
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.2e-13 80.1 99 49.5
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.2e-13 80.1 60 70.0
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.2e-13 80.1 60 70.0
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.2e-13 80.1 99 50.5
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.2e-13 80.1 64 64.1
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.2e-13 80.1 90 52.2
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 2.6e-13 79.0 65 58.5
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 2.6e-13 79.0 64 65.6
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.6e-13 79.0 64 62.5
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.6e-13 79.0 99 49.5
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.4e-13 78.6 60 66.7
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.4e-13 78.6 60 66.7
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 4.4e-13 78.2 91 51.6
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 4.4e-13 78.2 99 49.5
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 4.4e-13 78.2 63 61.9
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 9.8e-13 77.0 64 60.9
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.3e-12 76.6 60 65.0
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.3e-12 76.6 60 65.0
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.3e-12 76.6 60 65.0
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.7e-12 76.3 62 61.3
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.7e-12 76.3 64 62.5
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 4.9e-12 74.7 64 57.8
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 6.4e-12 74.3 58 65.5
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.1e-11 73.6 63 58.7
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.4e-11 73.2 62 59.7
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.4e-11 73.2 62 59.7
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.9e-11 72.8 62 59.7
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.9e-11 72.8 58 65.5
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.9e-11 72.8 67 58.2
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.9e-11 72.8 62 58.1
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.9e-11 72.8 84 46.4
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.4e-11 72.4 83 50.6
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-11 72.4 57 63.2
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-11 72.4 57 63.2
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.4e-11 72.4 57 63.2
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 2.4e-11 72.4 62 59.7
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.1e-11 71.6 90 48.9
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 4.1e-11 71.6 58 63.8
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 4.1e-11 71.6 61 60.7
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.1e-11 71.6 63 58.7
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 5.4e-11 71.2 94 41.5
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 5.4e-11 71.2 64 54.7
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 5.4e-11 71.2 62 58.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 5.4e-11 71.2 58 62.1
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 7.0e-11 70.9 62 58.1
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.0e-11 70.9 59 59.3
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 9.2e-11 70.5 63 57.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 9.2e-11 70.5 58 63.8
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.2e-11 70.5 79 48.1
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 9.2e-11 70.5 62 58.1
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 9.2e-11 70.5 63 57.1
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 9.2e-11 70.5 58 60.3
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 9.2e-11 70.5 58 60.3
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.2e-10 70.1 62 58.1
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.2e-10 70.1 60 58.3
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.2e-10 70.1 57 61.4
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.2e-10 70.1 58 60.3
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.2e-10 70.1 62 58.1
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.2e-10 70.1 65 58.5
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.2e-10 70.1 58 63.8
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-10 70.1 59 61.0
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.2e-10 70.1 62 58.1
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.6e-10 69.7 62 58.1
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.6e-10 69.7 62 58.1
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.6e-10 69.7 58 60.3
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.6e-10 69.7 58 60.3
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.6e-10 69.7 61 57.4
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 1.6e-10 69.7 58 62.1
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.6e-10 69.7 57 61.4
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.0e-10 69.3 63 57.1
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.0e-10 69.3 62 58.1
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 2.7e-10 68.9 58 60.3
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 2.7e-10 68.9 62 56.5
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 2.7e-10 68.9 57 61.4
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 3.5e-10 68.6 62 54.8
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 3.5e-10 68.6 59 59.3
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.5e-10 68.6 59 59.3
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 3.5e-10 68.6 59 59.3
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.5e-10 68.6 59 59.3
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 3.5e-10 68.6 58 58.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 4.6e-10 68.2 62 56.5
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 4.6e-10 68.2 62 56.5
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.6e-10 68.2 58 62.1
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.6e-10 68.2 59 59.3
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 6.0e-10 67.8 63 55.6
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.0e-10 67.8 86 44.2
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 6.0e-10 67.8 55 61.8
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 7.8e-10 67.4 63 52.4
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 7.8e-10 67.4 63 52.4
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 7.8e-10 67.4 63 52.4
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 7.8e-10 67.4 63 52.4
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 7.8e-10 67.4 63 52.4
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 7.8e-10 67.4 59 59.3
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.0e-09 67.0 62 54.8
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.0e-09 67.0 62 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.3e-09 66.6 60 58.3
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.3e-09 66.6 56 62.5
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.3e-09 66.6 57 59.6
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.7e-09 66.2 62 54.8
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.7e-09 66.2 61 55.7
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.3e-09 65.9 59 55.9
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.3e-09 65.9 62 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 3.0e-09 65.5 61 54.1
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.0e-09 65.5 63 54.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 3.9e-09 65.1 58 56.9
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 6.6e-09 64.3 63 57.1
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-08 62.8 58 56.9
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 2.5e-08 62.4 59 52.5
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 4.3e-08 61.6 64 48.4
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.6e-08 61.2 56 53.6
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 9.5e-08 60.5 101 37.6
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.6e-07 59.7 88 43.2
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.6e-07 59.7 54 55.6
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.8e-07 58.9 62 50.0
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.1e-06 57.0 69 52.2
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 4.0e-06 55.1 58 46.6


User provided reference genes

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