Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D05G085200 Gossypium hirsutum HOM05D010941 ORTHO05D000412 2.2e-55 218.8 116 100.0
Gorai.009G087000 Gossypium raimondii HOM05D000581 ORTHO05D000412 2.2e-55 218.8 116 100.0
Gohir.A05G082300 Gossypium hirsutum HOM05D010941 ORTHO05D000412 4.6e-53 211.1 114 97.4
Duzib170G0821 Durio zibethinus HOM05D000581 ORTHO05D000412 5.7e-43 177.6 116 80.2
Duzib168G0145 Durio zibethinus HOM05D010941 ORTHO05D000412 4.4e-35 151.4 106 76.4
Thecc.09G287400 Theobroma cacao HOM05D010941 ORTHO05D000412 5.7e-27 124.4 91 73.6
Sabra09G0112800 Salix brachista HOM05D000581 ORTHO05D000412 8.2e-26 120.6 97 61.9
CiPaw.13G138400 Carya illinoinensis HOM05D000581 ORTHO05D000412 3.1e-25 118.6 101 58.4
Dinv29449 Davidia involucrata HOM05D000581 ORTHO05D000412 1.1e-22 110.2 110 52.7
QL01p013207 Quercus lobata HOM05D000581 ORTHO05D000412 2.5e-22 109.0 97 55.7
Lalb_Chr24g0395251 Lupinus albus HOM05D000581 ORTHO05D000412 4.2e-22 108.2 108 48.1
Glyma.13G317900 Glycine max HOM05D000581 ORTHO05D000412 7.2e-22 107.5 112 47.3
TPR.G23789 Trifolium pratense HOM05D010941 ORTHO05D000412 4.7e-21 104.8 113 47.8
ClCG02G022070 Citrullus lanatus HOM05D010941 ORTHO05D000412 3.0e-20 102.1 106 51.9
Sed0003716 Sechium edule HOM05D010941 ORTHO05D000412 5.2e-20 101.3 106 51.9
COL.COLO4_19933 Corchorus olitorius HOM05D010941 ORTHO05D000412 8.8e-20 100.5 114 59.6
MELO3C035176.2 Cucumis melo HOM05D010941 ORTHO05D000412 1.5e-19 99.8 106 48.1
CsaV3_6G014900 Cucumis sativus L. HOM05D010941 ORTHO05D000412 2.2e-18 95.9 106 47.2
Phvul.005G125700 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 4.8e-18 94.7 112 45.5
Cfa010058 Carpinus fangiana HOM05D000581 ORTHO05D000412 1.4e-17 93.2 76 61.8
Medtr2g086010 Medicago truncatula HOM05D010941 ORTHO05D000412 2.4e-17 92.4 109 45.9
Medtr2g085155 Medicago truncatula HOM05D010941 ORTHO05D000412 7.0e-17 90.9 133 40.6
PGR102G2836 Punica granatum HOM05D000581 ORTHO05D000412 9.1e-17 90.5 105 47.6
GSVIVG01036181001 Vitis vinifera HOM05D010941 ORTHO05D000412 9.1e-17 90.5 91 50.5
Prupe.6G124800 Prunus persica HOM05D000581 ORTHO05D000412 1.6e-16 89.7 69 65.2
Ciclev10029511m.g Citrus clementina HOM05D000581 ORTHO05D000412 2.0e-16 89.4 107 41.1
Lj3g0023809 Lotus japonicus HOM05D010941 ORTHO05D000412 1.3e-15 86.7 105 45.7
Glyma.11G187300 Glycine max HOM05D000581 ORTHO05D000412 1.4e-12 76.6 107 38.3
QL01p013198 Quercus lobata HOM05D000581 ORTHO05D000412 1.2e-11 73.6 98 35.7
Solyc12g036230.3 Solanum lycopersicum HOM05D010941 ORTHO05D000412 1.2e-11 73.6 105 38.1
MBI17_g16875_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 3.4e-11 72.0 107 35.5
VMungo1080G1526 Vigna mungo HOM05D000581 ORTHO05D000412 3.4e-11 72.0 113 34.5
Sopen12g016360 Solanum pennellii HOM05D010941 ORTHO05D000412 4.4e-11 71.6 105 38.1
Manes.09G059100 Manihot esculenta HOM05D000581 ORTHO05D000412 2.2e-10 69.3 105 36.2
Dinv31661 Davidia involucrata HOM05D000581 ORTHO05D000412 6.3e-10 67.8 116 36.2
Duzib093G1459 Durio zibethinus HOM05D000581 ORTHO05D000412 1.4e-09 66.6 105 35.2
Haze_23427 Corylus avellana HOM05D000581 ORTHO05D000412 4.1e-09 65.1 102 33.3
TAR623G0761 Trochodendron aralioides HOM05D000581 ORTHO05D000412 4.1e-09 65.1 100 37.0
Zm00001eb096040 Zea mays HOM05D000581 ORTHO05D000412 4.1e-09 65.1 105 31.4
CiPaw.14G102400 Carya illinoinensis HOM05D000581 ORTHO05D000412 5.4e-09 64.7 113 30.1
Thecc.05G085200 Theobroma cacao HOM05D000581 ORTHO05D000412 7.0e-09 64.3 105 35.2
CDE08G0017 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 9.1e-09 63.9 104 30.8
HPP92_003275 Vanilla planifolia HOM05D000581 ORTHO05D000412 9.1e-09 63.9 104 30.8
Duzib128G0312 Durio zibethinus HOM05D000581 ORTHO05D000412 1.2e-08 63.5 105 35.2
FvH4_6g18230 Fragaria vesca HOM05D018852 ORTHO05D022587 1.2e-08 63.5 103 36.9
TAR627G1138 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.2e-08 63.5 105 32.4
CDE06G0806 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.6e-08 63.2 104 30.8
Potri.004G185900 Populus trichocarpa HOM05D000581 ORTHO05D000412 2.0e-08 62.8 105 31.4
Gohir.D09G136500 Gossypium hirsutum HOM05D000581 ORTHO05D000412 3.5e-08 62.0 105 34.3
Os09g0567400 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 3.5e-08 62.0 113 28.3
Gorai.006G156600 Gossypium raimondii HOM05D000581 ORTHO05D000412 4.5e-08 61.6 105 34.3
Os08g0557700 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 4.5e-08 61.6 97 28.9
Zm00001eb176120 Zea mays HOM05D000581 ORTHO05D000412 5.9e-08 61.2 103 30.1
Haze_23422 Corylus avellana HOM05D010941 ORTHO05D000412 1.3e-07 60.1 72 47.2
Cfa010060 Carpinus fangiana HOM05D000581 ORTHO05D000412 3.8e-07 58.5 104 30.8
Hma1.2p1_0643F.1_g194570 Hydrangea macrophylla HOM05D000581 ORTHO05D000412 3.8e-07 58.5 99 33.3
Thecc.09G288300 Theobroma cacao HOM05D000581 ORTHO05D000412 3.8e-07 58.5 107 30.8
GSVIVG01034756001 Vitis vinifera HOM05D000581 ORTHO05D000412 3.8e-07 58.5 98 35.7
Zm00001eb039590 Zea mays HOM05D000581 ORTHO05D000412 3.8e-07 58.5 97 27.8
Ciclev10033008m.g Citrus clementina HOM05D000581 ORTHO05D000412 5.0e-07 58.2 100 28.0
Manes.08G023500 Manihot esculenta HOM05D000581 ORTHO05D000412 5.0e-07 58.2 106 34.9
Solyc01g080540.3 Solanum lycopersicum HOM05D000581 ORTHO05D000412 6.6e-07 57.8 102 31.4
Sopen01g032360 Solanum pennellii HOM05D000581 ORTHO05D000412 8.6e-07 57.4 99 31.3
PGSC0003DMG400032101 Solanum tuberosum HOM05D000581 ORTHO05D000412 8.6e-07 57.4 99 31.3
Duzib151G0330 Durio zibethinus HOM05D000581 ORTHO05D000412 1.1e-06 57.0 99 32.3
Thecc.04G273700 Theobroma cacao HOM05D000581 ORTHO05D000412 1.1e-06 57.0 99 32.3
TAR365G0048 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.1e-06 57.0 99 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2310 Anthoceros agrestis HOM05D000581 ORTHO05D000412 1.5e-06 56.6 99 30.3
CSS0026132 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 1.5e-06 56.6 103 30.1
Duzib170G0963 Durio zibethinus HOM05D000581 ORTHO05D000412 1.5e-06 56.6 104 31.7
Lj9A678T39 Lonicera japonica HOM05D000581 ORTHO05D000412 1.5e-06 56.6 99 30.3
Lj3g0026832 Lotus japonicus HOM05D000581 ORTHO05D000412 1.5e-06 56.6 78 42.3
Nitab4.5_0000059g0300 Nicotiana tabacum HOM05D000581 ORTHO05D000412 1.5e-06 56.6 99 32.3
Oeu044805.1 Olea europaea HOM05D000581 ORTHO05D000412 1.5e-06 56.6 99 31.3
CAN.G1157.4 Capsicum annuum HOM05D000581 ORTHO05D000412 1.9e-06 56.2 99 30.3
Gohir.A10G104700 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.9e-06 56.2 99 31.3
Gohir.D10G164000 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.9e-06 56.2 99 31.3
VMungo1127G1930 Vigna mungo HOM05D000581 ORTHO05D000412 1.9e-06 56.2 75 36.0
Cpa.g.sc32.127 Carica papaya HOM05D000581 ORTHO05D000412 2.5e-06 55.8 61 50.8
Duzib212G0159 Durio zibethinus HOM05D000581 ORTHO05D000412 3.3e-06 55.5 99 31.3
Lj6g0021208 Lotus japonicus HOM05D000373 ORTHO05D001146 3.3e-06 55.5 102 30.4
Mapoly0091s0072 Marchantia polymorpha HOM05D000581 ORTHO05D000412 3.3e-06 55.5 98 30.6
QL10p017822 Quercus lobata HOM05D000581 ORTHO05D000412 3.3e-06 55.5 70 34.3
Actinidia05735 Actinidia chinensis HOM05D000581 ORTHO05D000412 4.2e-06 55.1 99 29.3
CAN.G134.229 Capsicum annuum HOM05D000581 ORTHO05D000412 4.2e-06 55.1 99 31.3
Peaxi162Scf00095g00213 Petunia axillaris HOM05D000581 ORTHO05D000412 4.2e-06 55.1 99 30.3
Solyc01g098400.3 Solanum lycopersicum HOM05D000581 ORTHO05D000412 4.2e-06 55.1 99 30.3
Sopen01g041970 Solanum pennellii HOM05D000581 ORTHO05D000412 4.2e-06 55.1 99 30.3
CSS0034339 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 5.5e-06 54.7 107 30.8
Peaxi162Scf00434g00728 Petunia axillaris HOM05D000581 ORTHO05D000412 5.5e-06 54.7 99 31.3
TAR362G1287 Trochodendron aralioides HOM05D000581 ORTHO05D000412 5.5e-06 54.7 99 31.3
Cfa006524 Carpinus fangiana HOM05D000581 ORTHO05D000412 7.2e-06 54.3 99 29.3
Cfa015522 Carpinus fangiana HOM05D000581 ORTHO05D000412 7.2e-06 54.3 99 31.3
Cfa016574 Carpinus fangiana HOM05D000581 ORTHO05D000412 7.2e-06 54.3 96 33.3
Manes.15G019500 Manihot esculenta HOM05D000581 ORTHO05D000412 7.2e-06 54.3 99 31.3
Medtr1g082290 Medicago truncatula HOM05D000581 ORTHO05D000412 7.2e-06 54.3 99 30.3
RcHm_v2.0_Chr3g0472651 Rosa chinensis HOM05D018852 ORTHO05D000412 7.2e-06 54.3 103 33.0
PGSC0003DMG400028593 Solanum tuberosum HOM05D000581 ORTHO05D000412 7.2e-06 54.3 99 30.3
GSVIVG01022018001 Vitis vinifera HOM05D000581 ORTHO05D000412 7.2e-06 54.3 99 29.3
Dinv38343 Davidia involucrata HOM05D000581 ORTHO05D000412 9.5e-06 53.9 99 31.3
Manes.03G189000 Manihot esculenta HOM05D000581 ORTHO05D000412 9.5e-06 53.9 99 30.3
Nitab4.5_0008107g0010 Nicotiana tabacum HOM05D000581 ORTHO05D000412 9.5e-06 53.9 99 30.3
TAR636G3222 Trochodendron aralioides HOM05D000581 ORTHO05D000412 9.5e-06 53.9 99 28.3


User provided reference genes

Program Settings