Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 6.1e-264 913.7 488 100.0
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 6.5e-258 893.6 488 93.6
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 6.5e-258 893.6 488 93.6
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 9.8e-230 800.0 488 80.7
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.7e-226 789.3 488 81.1
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 4.8e-184 648.3 492 68.9
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 1.4e-183 646.7 445 71.5
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 5.8e-182 641.3 488 65.8
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.0e-181 640.6 488 63.9
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 3.8e-181 638.6 488 63.7
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 8.4e-181 637.5 488 63.7
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.1e-180 637.1 492 65.0
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.4e-180 636.7 488 63.7
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.2e-180 635.2 492 64.8
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.1e-179 632.9 492 64.2
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 4.6e-179 631.7 465 67.1
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 3.7e-176 622.1 528 62.9
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 8.2e-176 620.9 488 65.6
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 4.1e-175 618.6 488 62.3
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 5.3e-175 618.2 488 64.8
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 9.0e-175 617.5 488 65.0
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.2e-173 612.8 419 72.1
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.1e-172 610.5 488 64.1
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 1.4e-172 610.1 488 62.3
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.9e-172 609.8 486 63.8
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.9e-172 609.8 490 62.7
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 1.2e-171 607.1 485 63.9
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.7e-171 605.9 488 64.8
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 4.6e-171 605.1 489 64.0
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 3.0e-170 602.4 490 63.1
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 3.0e-170 602.4 488 62.7
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.3e-168 597.0 409 72.1
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 8.2e-168 594.3 450 67.3
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.4e-167 592.8 484 63.6
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 4.1e-167 592.0 409 71.6
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 4.1e-167 592.0 489 62.2
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 2.0e-166 589.7 405 71.9
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 3.4e-166 589.0 405 71.4
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 7.7e-166 587.8 485 62.9
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 1.0e-165 587.4 405 71.4
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.7e-165 586.6 379 74.4
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 1.7e-165 586.6 368 75.5
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.7e-165 586.6 426 67.8
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.9e-165 585.9 460 64.1
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 3.8e-165 585.5 378 71.7
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 6.5e-165 584.7 377 74.0
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 5.5e-164 581.6 447 64.9
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 3.6e-163 578.9 462 65.8
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 4.6e-163 578.6 493 61.9
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 6.1e-163 578.2 397 70.8
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 7.9e-163 577.8 377 72.1
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 1.8e-162 576.6 488 60.0
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 6.7e-162 574.7 395 69.6
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.0e-161 573.2 491 62.1
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 7.4e-161 571.2 499 60.1
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 7.4e-161 571.2 489 62.2
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.3e-160 570.5 466 62.7
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.7e-160 570.1 442 68.3
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 2.2e-160 569.7 488 60.7
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 2.2e-160 569.7 493 59.6
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 3.7e-160 568.9 488 60.5
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 4.8e-160 568.5 460 62.2
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 4.8e-160 568.5 411 67.6
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 1.1e-159 567.4 460 62.2
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.1e-159 567.4 451 63.6
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.8e-159 566.6 465 61.5
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 7.7e-158 561.2 501 59.3
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.0e-157 560.8 445 66.1
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.3e-157 560.5 501 58.9
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.7e-157 560.1 382 69.6
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 2.9e-157 559.3 380 71.6
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 2.9e-157 559.3 478 60.0
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 3.8e-157 558.9 320 79.1
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 6.5e-157 558.1 363 72.2
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 3.2e-156 555.8 452 63.9
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 3.2e-156 555.8 395 69.9
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 7.2e-156 554.7 385 69.6
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 9.4e-156 554.3 410 67.8
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.6e-155 553.5 456 62.5
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 1.6e-155 553.5 486 60.9
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 2.1e-155 553.1 470 61.3
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 1.8e-154 550.1 490 65.7
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 5.1e-154 548.5 387 71.3
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 1.1e-153 547.4 405 68.1
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 2.0e-153 546.6 440 63.0
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.3e-152 543.9 460 60.9
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 2.2e-152 543.1 467 66.2
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.4e-151 539.7 502 57.6
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 2.4e-151 539.7 482 59.8
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 5.0e-149 531.9 358 72.1
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.3e-146 523.1 456 65.6
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 6.7e-146 521.5 456 65.6
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 1.5e-145 520.4 268 89.6
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 4.4e-145 518.8 378 66.9
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 7.0e-143 511.5 577 49.6
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 2.9e-141 506.1 383 67.9
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 2.9e-141 506.1 458 57.9
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.6e-139 499.2 370 66.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.4e-138 497.3 484 57.0
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.8e-135 486.9 371 63.3
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 7.0e-127 458.4 335 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 4.5e-126 455.7 376 62.2
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 6.1e-123 445.3 465 52.9
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 2.1e-115 420.2 357 56.3
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.7e-112 410.6 289 67.5
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.7e-112 409.5 279 65.6
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.2e-105 387.9 316 63.9
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.4e-95 354.4 244 68.4
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 5.1e-93 345.9 258 67.4
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 3.5e-86 323.2 376 48.9
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.4e-79 301.2 231 61.0
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.4e-73 280.0 204 59.8
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 2.2e-72 277.3 316 44.6
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.2e-72 277.3 204 58.3
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.9e-72 276.2 204 57.8
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-71 275.0 204 59.3
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 3.0e-69 266.9 272 48.5
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.9e-53 213.4 210 51.0
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 9.1e-34 149.1 98 63.3
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 2.5e-31 141.0 141 57.4
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 2.3e-21 107.8 162 42.0
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 4.0e-13 80.5 345 23.8
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.0e-12 78.2 285 23.9
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 2.0e-12 78.2 295 21.4
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 2.0e-12 78.2 295 21.4
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 3.4e-12 77.4 335 24.8
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 3.4e-12 77.4 276 24.6
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 9.8e-12 75.9 284 25.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.2e-11 74.7 286 22.0
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.2e-11 74.7 270 22.2
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 2.8e-11 74.3 271 24.7
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.7e-11 73.9 273 23.8
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 3.7e-11 73.9 295 21.4
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 8.3e-11 72.8 294 22.8
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.1e-10 72.4 348 22.4
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.4e-10 72.0 357 20.4
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.4e-10 71.2 235 23.0
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.2e-09 68.9 272 21.7
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 5.9e-09 66.6 271 23.2
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.7e-08 65.1 311 22.8
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 5.0e-08 63.5 315 21.0
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 6.6e-08 63.2 134 23.9
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 8.6e-08 62.8 376 21.5
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 3.3e-07 60.8 97 41.2


User provided reference genes

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