Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G156733 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.2e-64 249.6 120 100.0
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.7e-54 214.2 118 88.1
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 8.2e-53 210.3 118 88.1
Gorai.013G138600 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.4e-47 193.0 119 82.4
Gohir.D13G123550 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.5e-46 189.5 119 80.7
Gohir.A07G134850 Gossypium hirsutum HOM05D000806 ORTHO05D002320 9.1e-44 180.3 101 88.1
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.8e-42 174.9 116 73.3
Gorai.001G212300 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.3e-34 149.8 88 84.1
Gohir.A08G085042 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.8e-34 148.3 83 85.5
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 3.2e-33 145.2 119 66.4
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 3.3e-30 135.2 119 64.7
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.4e-30 134.0 87 77.0
EL10As15g24118 Beta vulgaris HOM05D001133 ORTHO05D000941 1.1e-28 130.2 120 62.5
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.1e-28 130.2 120 62.5
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 1.1e-28 130.2 118 64.4
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 4.1e-28 128.3 120 59.2
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.1e-28 128.3 120 59.2
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.1e-28 128.3 120 59.2
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.1e-28 128.3 120 59.2
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 7.0e-28 127.5 118 58.5
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 7.0e-28 127.5 120 60.0
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 3.5e-27 125.2 118 58.5
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 4.5e-27 124.8 118 57.6
Lsat_1_v5_gn_4_102681 Lactuca sativa HOM05D000806 ORTHO05D002320 1.0e-26 123.6 118 56.8
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 2.5e-25 119.0 120 55.0
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 7.2e-25 117.5 118 53.4
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 7.2e-25 117.5 118 53.4
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 7.2e-25 117.5 119 55.5
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 9.4e-25 117.1 118 57.6
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 1.6e-24 116.3 118 53.4
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 1.6e-24 116.3 118 53.4
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.6e-24 116.3 118 53.4
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 4.7e-24 114.8 119 57.1
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.8e-23 112.8 119 58.0
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 2.3e-23 112.5 118 51.7
Gohir.D04G104036 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.0e-23 112.1 73 75.3
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 3.0e-23 112.1 119 56.3
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 4.0e-23 111.7 118 56.8
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 4.0e-23 111.7 118 56.8
CARHR282090 Cardamine hirsuta HOM05D000806 ORTHO05D002320 6.7e-23 110.9 118 52.5
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 8.8e-23 110.5 120 55.0
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 1.2e-22 110.2 118 55.9
MELO3C000334.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.5e-22 109.8 119 56.3
MELO3C028653.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.5e-22 109.8 119 56.3
Gohir.D07G185900 Gossypium hirsutum HOM05D001133 ORTHO05D000941 2.0e-22 109.4 62 82.3
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 4.4e-22 108.2 119 52.1
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
HanXRQChr08g0210341 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
HanXRQChr13g0413531 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-22 107.8 118 51.7
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 7.5e-22 107.5 121 52.1
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 2.8e-21 105.5 118 50.0
MD02G1049600 Malus domestica HOM05D001133 ORTHO05D000941 3.7e-21 105.1 95 63.2
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 1.1e-20 103.6 122 49.2
CAN.G1.10 Capsicum annuum HOM05D000806 ORTHO05D002320 2.5e-17 92.4 90 60.0
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 7.2e-17 90.9 116 48.3
MD11G1294900 Malus domestica HOM05D001133 ORTHO05D000941 6.1e-16 87.8 86 59.3
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.8e-15 86.3 47 85.1
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 3.0e-15 85.5 90 56.7
BolSC46t60998H Brassica oleracea HOM05D000806 ORTHO05D002320 5.2e-15 84.7 88 50.0
Lsat_1_v5_gn_4_69480 Lactuca sativa HOM05D000806 ORTHO05D002320 6.8e-15 84.3 104 46.2
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 8.8e-15 84.0 120 45.8
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 1.5e-14 83.2 112 49.1
arahy.Tifrunner.gnm1.ann1.3WU3U6 Arachis hypogaea HOM05D000806 ORTHO05D002320 5.7e-14 81.3 92 52.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.7e-13 78.6 66 59.1
Gorai.001G206400 Gossypium raimondii HOM05D001133 ORTHO05D000941 6.3e-13 77.8 48 75.0
MELO3C034228.2 Cucumis melo HOM05D000806 ORTHO05D002320 7.0e-12 74.3 97 48.5
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 1.6e-11 73.2 87 47.1
Lsat_1_v5_gn_7_98321 Lactuca sativa HOM05D000806 ORTHO05D002320 1.6e-11 73.2 125 40.8
EL10As12g24027 Beta vulgaris HOM05D000806 ORTHO05D002320 3.5e-11 72.0 54 66.7
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.0e-10 70.5 55 61.8
Gohir.A07G163645 Gossypium hirsutum HOM05D001133 ORTHO05D000941 1.7e-10 69.7 39 82.1
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 3.8e-10 68.6 81 48.1
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.8e-10 68.6 53 64.2
MELO3C029533.2 Cucumis melo HOM05D000806 ORTHO05D002320 6.6e-10 67.8 73 56.2
Migut.D01360 Erythranthe guttata HOM05D000806 ORTHO05D002320 8.6e-10 67.4 112 42.9
Sabra10G0056400 Salix brachista HOM05D001133 ORTHO05D000941 1.5e-09 66.6 68 60.3
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 7.2e-09 64.3 53 60.4
Psat0s1152g0040 Pisum sativum HOM05D000806 ORTHO05D002320 9.5e-09 63.9 110 41.8
Lsat_1_v5_gn_2_70561 Lactuca sativa HOM05D000806 ORTHO05D002320 1.0e-07 60.5 68 51.5
MELO3C031612.2 Cucumis melo HOM05D000806 ORTHO05D002320 2.3e-07 59.3 81 45.7
BraSC58t46420Z Brassica rapa HOM05D000806 ORTHO05D002320 6.8e-07 57.8 64 46.9
Nn1g04062 Nelumbo nucifera HOM05D000806 ORTHO05D002320 6.8e-07 57.8 57 57.9
Nn1g07561 Nelumbo nucifera HOM05D000806 ORTHO05D002320 6.8e-07 57.8 57 57.9
Medtr4g050863 Medicago truncatula HOM05D062263 ORTHO05D002320 2.6e-06 55.8 101 42.6


User provided reference genes

Program Settings