Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.5e-170 600.1 311 100.0
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 3.8e-102 375.6 355 64.5
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 8.8e-99 364.4 356 62.6
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.4e-93 344.4 344 61.3
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.6e-92 343.6 345 61.2
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.3e-91 339.7 290 71.0
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.0e-91 339.3 290 71.0
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 6.7e-91 338.2 349 60.5
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.6e-79 300.4 355 55.5
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.0e-78 297.7 351 53.8
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.3e-70 270.8 353 49.9
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 5.7e-66 255.4 360 50.0
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 3.7e-65 252.7 352 47.7
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.9e-65 252.3 348 48.6
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 6.3e-65 251.9 349 48.4
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 7.0e-64 248.4 349 48.7
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.0e-64 248.4 349 48.7
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.2e-63 247.7 349 47.9
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.0e-63 246.9 349 48.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.7e-63 246.5 351 47.6
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 4.6e-63 245.7 357 48.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 5.9e-63 245.4 335 49.6
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.7e-62 243.8 350 48.0
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 6.6e-62 241.9 355 47.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.1e-61 241.1 356 46.3
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.9e-61 240.4 356 48.3
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.5e-61 240.0 356 47.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.3e-61 239.6 352 48.9
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 4.3e-61 239.2 355 47.6
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 4.3e-61 239.2 355 47.3
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 2.8e-60 236.5 356 45.8
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 4.7e-60 235.7 386 45.9
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 4.7e-60 235.7 374 47.1
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.8e-59 233.8 351 44.7
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.5e-58 230.7 361 46.5
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.6e-58 229.9 361 45.2
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 5.8e-58 228.8 356 45.5
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 7.5e-58 228.4 356 46.9
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.3e-57 227.6 367 43.6
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.7e-57 227.3 361 46.5
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.2e-57 226.9 334 47.3
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 4.9e-57 225.7 402 41.3
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 6.4e-57 225.3 357 45.7
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 8.3e-57 224.9 352 47.4
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.4e-56 224.2 356 44.1
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.4e-56 223.4 358 45.5
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 3.2e-56 223.0 407 43.2
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 7.0e-56 221.9 364 46.2
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 7.0e-56 221.9 366 44.8
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.6e-55 220.7 371 43.7
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.0e-55 220.3 359 44.8
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.7e-55 219.9 353 47.0
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 2.7e-55 219.9 354 45.8
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 2.7e-55 219.9 357 44.8
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 3.5e-55 219.5 357 45.4
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 3.5e-55 219.5 371 43.7
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 6.0e-55 218.8 352 44.6
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 6.0e-55 218.8 352 44.0
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.0e-54 218.0 352 44.3
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.3e-54 217.6 359 44.6
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.3e-54 217.6 357 42.3
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.0e-54 216.5 355 45.6
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 5.0e-54 215.7 361 41.8
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 5.0e-54 215.7 337 46.9
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 6.6e-54 215.3 358 44.1
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 1.1e-53 214.5 360 43.9
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.1e-53 214.5 352 43.2
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.5e-53 213.4 359 44.0
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.2e-52 211.1 404 39.9
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.6e-52 210.7 359 44.0
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.6e-52 210.7 356 43.5
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.1e-52 210.3 350 42.6
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.8e-52 209.9 349 44.7
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.8e-52 209.9 368 42.1
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 4.7e-52 209.1 367 42.8
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 6.2e-52 208.8 365 42.7
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 8.1e-52 208.4 347 47.0
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.4e-51 207.6 367 42.5
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.8e-51 207.2 358 41.6
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.2e-50 204.5 335 43.0
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 3.4e-50 203.0 360 42.8
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 3.4e-50 203.0 378 39.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 5.8e-50 202.2 328 47.6
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.8e-50 202.2 359 44.6
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.7e-49 200.7 362 42.3
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.2e-49 200.3 349 42.4
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.1e-48 198.0 357 45.7
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.1e-48 198.0 361 41.3
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.4e-48 197.6 366 42.9
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.4e-48 195.7 349 42.1
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.1e-47 193.7 350 41.7
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.1e-47 193.7 350 41.7
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 7.8e-47 191.8 306 45.1
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.3e-46 190.3 329 43.5
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 7.3e-45 185.3 356 40.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.6e-44 183.0 332 41.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.8e-43 180.6 355 43.1
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.3e-43 180.3 330 41.8
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.3e-43 180.3 350 41.1
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.2e-43 179.1 364 40.7
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 5.2e-43 179.1 352 40.1
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.6e-42 176.8 353 40.8
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 3.4e-42 176.4 356 39.6
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.7e-41 174.1 366 37.4
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 6.4e-41 172.2 229 48.9
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 6.4e-41 172.2 349 39.5
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 7.1e-40 168.7 348 39.4
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.6e-39 167.5 307 41.7
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.1e-39 167.2 362 38.4
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.7e-38 164.1 351 38.5
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 3.9e-38 162.9 360 39.7
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.3e-37 159.8 350 36.0
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 6.2e-36 155.6 352 37.8
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.1e-35 154.8 353 37.1
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 6.8e-35 152.1 344 36.9
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 8.9e-35 151.8 353 36.8
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 8.4e-33 145.2 333 34.5
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 9.3e-32 141.7 272 36.0
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 9.3e-32 141.7 379 33.0
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 8.1e-28 128.6 355 34.4
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.4e-27 127.9 325 35.4
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-27 127.9 167 46.7
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 6.9e-27 125.6 243 37.0
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 6.9e-27 125.6 243 37.0
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 6.9e-27 125.6 347 34.9
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.3e-25 121.3 216 43.1
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.9e-24 117.5 210 40.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.9e-24 117.5 344 34.3
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 2.5e-21 107.1 209 38.8
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.8e-20 103.6 317 30.6
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.8e-20 103.6 91 59.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.8e-19 100.9 75 68.0
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.1e-19 100.1 83 65.1
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.6e-18 97.1 296 35.5
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 2.2e-17 94.0 116 46.6
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 2.2e-17 94.0 116 46.6
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.8e-17 93.2 380 30.0
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.8e-11 74.3 51 68.6
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 2.4e-11 73.9 69 58.0
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.2e-10 71.6 121 43.0
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.9e-09 66.2 246 32.5
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.9e-08 64.3 94 42.6
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 5.5e-08 62.8 158 33.5
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 7.1e-08 62.4 51 58.8


User provided reference genes

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