Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.0e-119 432.6 233 100.0
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.7e-105 384.8 233 91.4
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.5e-103 379.8 233 90.6
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 6.0e-92 341.3 231 80.1
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 2.5e-90 335.9 233 79.8
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.3e-90 334.3 233 80.7
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.1e-89 332.8 233 79.8
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 5.2e-88 328.2 233 79.4
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 5.8e-79 298.1 233 73.0
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 2.3e-75 286.2 235 68.5
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 8.6e-75 284.3 233 68.7
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.5e-74 283.5 233 66.1
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 4.3e-74 282.0 224 69.6
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 1.1e-72 277.3 238 65.1
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.2e-71 273.9 230 66.1
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 5.8e-71 271.6 225 66.7
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 7.6e-71 271.2 224 68.8
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 9.9e-71 270.8 230 65.7
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.4e-69 266.2 239 63.6
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 4.2e-69 265.4 232 64.7
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 5.4e-69 265.0 234 65.4
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 2.1e-68 263.1 230 65.2
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 1.3e-67 260.4 264 61.0
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.0e-67 259.2 276 58.3
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.1e-66 257.3 240 66.7
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.1e-66 257.3 239 66.5
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.5e-66 256.9 222 65.3
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 4.3e-66 255.4 231 64.1
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 5.6e-66 255.0 238 63.4
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.3e-65 253.8 234 65.0
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.4e-64 250.4 227 65.2
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 3.1e-64 249.2 228 65.8
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 4.0e-64 248.8 223 63.7
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.5e-63 246.9 233 63.9
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 2.6e-63 246.1 225 64.9
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 2.6e-63 246.1 233 63.9
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.7e-62 243.4 216 63.9
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 2.9e-62 242.7 234 63.2
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.4e-61 240.4 228 64.0
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.4e-61 239.6 229 61.6
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 4.2e-61 238.8 219 63.0
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 5.4e-61 238.4 233 63.9
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.6e-60 236.9 215 66.0
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 2.1e-60 236.5 226 62.8
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.1e-60 236.5 217 63.1
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 2.7e-60 236.1 235 58.7
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 6.0e-60 235.0 232 61.2
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 7.9e-60 234.6 230 61.7
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.0e-59 234.2 226 60.6
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.3e-59 233.0 234 59.0
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 3.9e-59 232.3 232 59.1
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 5.1e-59 231.9 228 61.4
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.1e-58 230.7 225 61.8
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.1e-58 230.7 228 58.3
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 4.3e-58 228.8 225 61.8
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 5.6e-58 228.4 234 61.1
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 7.4e-58 228.0 230 57.8
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.6e-57 226.9 230 61.7
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.8e-56 223.4 232 57.8
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 3.1e-56 222.6 221 61.1
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 6.9e-56 221.5 232 56.9
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.0e-55 219.9 214 62.6
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.6e-55 219.5 232 58.6
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 2.6e-55 219.5 231 57.6
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.5e-55 218.8 223 57.8
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 5.8e-55 218.4 227 56.4
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 9.9e-55 217.6 226 58.8
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 9.9e-55 217.6 226 57.5
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.3e-54 217.2 226 58.4
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.7e-54 216.9 265 53.2
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.9e-54 216.1 228 59.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 4.9e-54 215.3 248 56.9
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 4.9e-54 215.3 229 57.2
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 6.4e-54 214.9 226 57.5
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 8.4e-54 214.5 227 55.1
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 2.4e-53 213.0 232 54.7
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 3.2e-53 212.6 232 60.3
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 3.2e-53 212.6 263 53.2
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 7.1e-53 211.5 228 58.3
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.6e-52 210.3 226 56.6
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 2.1e-52 209.9 217 58.1
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 7.9e-52 208.0 238 54.6
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.3e-51 207.2 227 56.4
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.8e-51 206.8 226 55.8
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.8e-51 206.8 226 55.8
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.8e-51 206.8 230 55.2
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 2.3e-51 206.5 220 58.6
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.5e-50 203.8 224 58.0
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.5e-50 203.8 221 55.2
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 9.6e-50 201.1 220 56.8
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.3e-49 200.7 225 57.8
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.7e-49 199.1 232 55.6
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 1.4e-48 197.2 229 54.1
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 6.9e-48 194.9 223 55.6
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 9.0e-48 194.5 186 60.8
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 9.0e-48 194.5 186 60.8
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.0e-46 191.0 209 59.8
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.3e-46 190.7 227 54.6
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 8.4e-46 188.0 221 52.5
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.2e-45 186.0 270 47.4
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.2e-45 186.0 270 47.4
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 3.2e-45 186.0 224 53.6
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 5.5e-45 185.3 192 58.9
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 7.1e-45 184.9 332 41.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 1.2e-44 184.1 229 52.8
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.2e-44 184.1 228 51.3
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 1.2e-44 184.1 229 52.8
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 1.2e-44 184.1 229 52.8
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.2e-44 184.1 228 51.3
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.7e-44 183.0 230 50.4
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 2.3e-43 179.9 222 53.2
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 3.0e-43 179.5 228 51.3
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 5.1e-43 178.7 233 50.6
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 2.2e-41 173.3 235 48.9
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 2.8e-41 172.9 227 49.3
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 6.3e-41 171.8 188 56.9
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.0e-39 166.8 229 48.5
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 7.6e-39 164.9 166 57.8
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 2.2e-38 163.3 215 50.2
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 3.2e-37 159.5 229 47.6
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 3.2e-37 159.5 229 47.6
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.2e-36 157.5 160 61.9
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 3.3e-34 149.4 229 47.6
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 9.7e-34 147.9 223 44.8
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.1e-32 144.4 128 65.6
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 5.3e-32 142.1 306 39.2
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.4e-29 134.0 160 56.9
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.8e-27 127.1 218 41.7
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 2.3e-27 126.7 96 69.8
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 8.8e-27 124.8 154 53.9
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 4.1e-24 115.9 202 44.1
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 5.0e-22 109.0 144 54.2
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 5.5e-21 105.5 241 36.5
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 1.4e-19 100.9 156 44.9
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.8e-19 100.5 225 36.4
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.8e-16 90.5 124 50.8
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 7.7e-15 85.1 93 54.8
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 7.7e-15 85.1 91 52.7
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.1e-12 77.0 81 60.5
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.6e-10 70.1 45 80.0
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.7e-10 68.9 45 80.0
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 1.7e-09 67.4 48 72.9
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 4.8e-09 65.9 53 64.2
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 4.8e-09 65.9 53 64.2
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.2e-07 61.2 150 36.0
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.6e-07 60.8 126 40.5
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 2.7e-07 60.1 90 44.4
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 2.2e-06 57.0 89 41.6
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 3.8e-06 56.2 63 52.4


User provided reference genes

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