Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A01G149600 Gossypium hirsutum HOM05D036329 ORTHO05D000926 2.3e-79 298.9 156 100.0
Gohir.A01G111800 Gossypium hirsutum HOM05D036329 ORTHO05D000926 9.3e-57 223.8 127 92.9
Gohir.A01G131311 Gossypium hirsutum HOM05D006351 ORTHO05D007796 1.6e-48 196.4 110 93.6
Gohir.A03G148600 Gossypium hirsutum HOM05D036329 ORTHO05D217435 8.2e-37 157.5 86 96.5
Gohir.A12G070400 Gossypium hirsutum HOM05D000187 ORTHO05D000926 4.1e-28 128.6 69 92.8
Gohir.A05G068700 Gossypium hirsutum HOM05D000187 ORTHO05D000926 5.2e-15 85.1 48 87.5
Gohir.D05G071700 Gossypium hirsutum HOM05D000187 ORTHO05D000926 5.2e-15 85.1 48 87.5
Gorai.009G072700 Gossypium raimondii HOM05D000187 ORTHO05D000926 5.2e-15 85.1 48 87.5
Ciclev10016714m.g Citrus clementina HOM05D000187 ORTHO05D000926 7.4e-14 81.3 54 70.4
Duzib168G1851 Durio zibethinus HOM05D000187 ORTHO05D000926 1.3e-13 80.5 48 81.2
Duzib170G0055 Durio zibethinus HOM05D000187 ORTHO05D000926 1.3e-13 80.5 48 81.2
Gohir.A08G013500 Gossypium hirsutum HOM05D000187 ORTHO05D000926 1.3e-13 80.5 48 81.2
Gohir.D08G023900 Gossypium hirsutum HOM05D000187 ORTHO05D000926 1.3e-13 80.5 48 81.2
Gorai.004G019200 Gossypium raimondii HOM05D000187 ORTHO05D000926 1.3e-13 80.5 48 81.2
Thecc.09G229500 Theobroma cacao HOM05D000187 ORTHO05D000926 1.3e-13 80.5 48 81.2
Manes.14G001800 Manihot esculenta HOM05D000187 ORTHO05D000926 2.2e-13 79.7 48 79.2
Cc00_g06090 Coffea canephora HOM05D000187 ORTHO05D000926 1.4e-12 77.0 48 77.1
Nitab4.5_0002026g0150 Nicotiana tabacum HOM05D000187 ORTHO05D000926 1.4e-12 77.0 48 75.0
Nitab4.5_0004629g0070 Nicotiana tabacum HOM05D000187 ORTHO05D000926 1.4e-12 77.0 48 75.0
arahy.Tifrunner.gnm1.ann1.JJ7D5C Arachis hypogaea HOM05D000187 ORTHO05D000926 1.8e-12 76.6 48 77.1
FAN25G0175 Fragaria x ananassa HOM05D000187 ORTHO05D000926 2.4e-12 76.3 58 65.5
RcHm_v2.0_Chr5g0051621 Rosa chinensis HOM05D000187 ORTHO05D000926 2.4e-12 76.3 48 70.8
GSVIVG01025294001 Vitis vinifera HOM05D000187 ORTHO05D000926 3.1e-12 75.9 48 75.0
arahy.Tifrunner.gnm1.ann1.GU2J6I Arachis hypogaea HOM05D000187 ORTHO05D000926 4.1e-12 75.5 48 75.0
Haze_23114 Corylus avellana HOM05D000187 ORTHO05D000926 4.1e-12 75.5 48 75.0
Haze_23117 Corylus avellana HOM05D000187 ORTHO05D000926 4.1e-12 75.5 48 75.0
FvH4_3g29040 Fragaria vesca HOM05D000187 ORTHO05D000926 4.1e-12 75.5 48 70.8
FAN21G0783 Fragaria x ananassa HOM05D000187 ORTHO05D000926 4.1e-12 75.5 48 70.8
MD03G1178200 Malus domestica HOM05D000187 ORTHO05D000926 4.1e-12 75.5 54 64.8
Peaxi162Scf00029g02618 Petunia axillaris HOM05D000187 ORTHO05D000926 4.1e-12 75.5 48 72.9
Dinv36269 Davidia involucrata HOM05D000187 ORTHO05D000926 5.3e-12 75.1 48 72.9
Lalb_Chr03g0026301 Lupinus albus HOM05D000187 ORTHO05D000926 5.3e-12 75.1 48 77.1
Os03g0173900 Oryza sativa ssp. japonica HOM05D000187 ORTHO05D000926 5.3e-12 75.1 48 72.9
Solyc11g062260.3 Solanum lycopersicum HOM05D000187 ORTHO05D000926 5.3e-12 75.1 48 75.0
Sopen11g024240 Solanum pennellii HOM05D000187 ORTHO05D000926 5.3e-12 75.1 48 75.0
vmacro04202 Vaccinium macrocarpon HOM05D000187 ORTHO05D000926 5.3e-12 75.1 48 72.9
Zm00001eb402080 Zea mays HOM05D000187 ORTHO05D000926 5.3e-12 75.1 48 70.8
Actinidia16321 Actinidia chinensis HOM05D000187 ORTHO05D000926 7.0e-12 74.7 48 72.9
MD11G1198000 Malus domestica HOM05D000187 ORTHO05D000926 7.0e-12 74.7 48 72.9
Rhsim13G0222700 Rhododendron simsii HOM05D000187 ORTHO05D000926 7.0e-12 74.7 48 72.9
QL01p005123 Quercus lobata HOM05D000187 ORTHO05D000926 9.1e-12 74.3 48 72.9
TWI60G0677 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 9.1e-12 74.3 48 75.0
FAN16G3176 Fragaria x ananassa HOM05D000187 ORTHO05D000926 1.2e-11 73.9 45 73.3
Medtr4g065670 Medicago truncatula HOM05D000187 ORTHO05D000926 1.2e-11 73.9 48 75.0
Prupe.4G244600 Prunus persica HOM05D000187 ORTHO05D000926 1.2e-11 73.9 48 70.8
TPR.G35026 Trifolium pratense HOM05D000187 ORTHO05D000926 1.2e-11 73.9 48 75.0
Dinv22188 Davidia involucrata HOM05D000187 ORTHO05D000926 1.6e-11 73.6 48 70.8
FAN11G1439 Fragaria x ananassa HOM05D000187 ORTHO05D000926 1.6e-11 73.6 45 73.3
PGSC0003DMG400032503 Solanum tuberosum HOM05D000187 ORTHO05D000926 1.6e-11 73.6 48 72.9
THA.LOC104811128 Tarenaya hassleriana HOM05D000187 ORTHO05D000926 2.0e-11 73.2 48 70.8
Glyma.11G132700 Glycine max HOM05D000187 ORTHO05D000926 2.6e-11 72.8 48 75.0
Glyma.12G057100 Glycine max HOM05D000187 ORTHO05D000926 2.6e-11 72.8 48 75.0
Lj3g0024503 Lotus japonicus HOM05D000187 ORTHO05D000926 2.6e-11 72.8 48 75.0
Psat7g212280 Pisum sativum HOM05D000187 ORTHO05D000926 2.6e-11 72.8 48 72.9
Sed0026311 Sechium edule HOM05D000187 ORTHO05D000926 2.6e-11 72.8 48 70.8
THA.LOC104804982 Tarenaya hassleriana HOM05D000187 ORTHO05D000926 2.6e-11 72.8 50 74.0
Zm00001eb005600 Zea mays HOM05D000187 ORTHO05D000926 2.6e-11 72.8 48 70.8
ClCG03G013370 Citrullus lanatus HOM05D000187 ORTHO05D000926 3.5e-11 72.4 48 72.9
DCAR_031558 Daucus carota HOM05D000187 ORTHO05D000926 3.5e-11 72.4 48 68.8
Nitab4.5_0000492g0150 Nicotiana tabacum HOM05D000187 ORTHO05D000926 3.5e-11 72.4 48 68.8
Atru.chr3.2611 Acer truncatum HOM05D000187 ORTHO05D000926 4.5e-11 72.0 48 70.8
Lj2A632T28 Lonicera japonica HOM05D000187 ORTHO05D000926 5.9e-11 71.6 48 70.8
Lalb_Chr19g0138131 Lupinus albus HOM05D000187 ORTHO05D000926 5.9e-11 71.6 48 72.9
Ca_21027_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000926 1.0e-10 70.9 44 79.5
MELO3C029471.2 Cucumis melo HOM05D000187 ORTHO05D000926 1.0e-10 70.9 48 70.8
PGR119G2308 Punica granatum HOM05D000187 ORTHO05D000926 1.0e-10 70.9 48 72.9
VMungo1127G0733 Vigna mungo HOM05D000187 ORTHO05D000926 1.0e-10 70.9 48 72.9
CSS0048619 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000926 1.3e-10 70.5 48 70.8
CsaV3_1G042670 Cucumis sativus L. HOM05D000187 ORTHO05D000926 1.3e-10 70.5 45 75.6
Sabra03G0151200 Salix brachista HOM05D000187 ORTHO05D000926 1.3e-10 70.5 48 70.8
HPP92_024884 Vanilla planifolia HOM05D000187 ORTHO05D000926 1.3e-10 70.5 48 70.8
CANSAT54G0040 Cannabis sativa HOM05D000187 ORTHO05D000926 1.7e-10 70.1 48 70.8
CsaV3_4G024180 Cucumis sativus L. HOM05D000187 ORTHO05D000926 1.7e-10 70.1 48 68.8
Oeu063318.1 Olea europaea HOM05D000187 ORTHO05D000926 1.7e-10 70.1 52 63.5
Sabra01G0013900 Salix brachista HOM05D000187 ORTHO05D000926 1.7e-10 70.1 49 65.3
TAR636G1650 Trochodendron aralioides HOM05D000187 ORTHO05D000926 1.7e-10 70.1 48 70.8
ClCG02G023330 Citrullus lanatus HOM05D000187 ORTHO05D000926 2.2e-10 69.7 48 68.8
Eucgr.J00781 Eucalyptus grandis HOM05D000187 ORTHO05D000926 2.2e-10 69.7 48 70.8
Eucgr.J00783 Eucalyptus grandis HOM05D000187 ORTHO05D000926 2.2e-10 69.7 48 70.8
Manes.06G165800 Manihot esculenta HOM05D000187 ORTHO05D000926 2.2e-10 69.7 48 68.8
Sc09g0000630 Simmondsia chinensis HOM05D000187 ORTHO05D000926 2.2e-10 69.7 48 68.8
MSTRG.18422 Avicennia marina HOM05D000187 ORTHO05D000926 2.9e-10 69.3 48 68.8
MELO3C014603.2 Cucumis melo HOM05D000187 ORTHO05D000926 2.9e-10 69.3 48 68.8
Potri.001G019600 Populus trichocarpa HOM05D000187 ORTHO05D000926 2.9e-10 69.3 48 68.8
TWI34G1859 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 2.9e-10 69.3 48 70.8
Lsat_1_v5_gn_6_47400 Lactuca sativa HOM05D000187 ORTHO05D000926 3.8e-10 68.9 48 68.8
Phvul.011G058800 Phaseolus vulgaris HOM05D000187 ORTHO05D000926 3.8e-10 68.9 48 70.8
MBI04_g28754_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000926 5.0e-10 68.6 48 66.7
Oeu025864.1 Olea europaea HOM05D000187 ORTHO05D000926 6.5e-10 68.2 48 66.7
Potri.003G204500 Populus trichocarpa HOM05D000187 ORTHO05D000926 6.5e-10 68.2 48 68.8
HanXRQChr02g0056331 Helianthus annuus HOM05D000187 ORTHO05D000926 8.5e-10 67.8 48 66.7
Nn2g15456 Nelumbo nucifera HOM05D000187 ORTHO05D000926 8.5e-10 67.8 48 66.7
ATR0605G300 Amborella trichopoda HOM05D000187 ORTHO05D000926 1.1e-09 67.4 48 66.7
Migut.D00588 Erythranthe guttata HOM05D000187 ORTHO05D000926 1.1e-09 67.4 48 66.7
TAR623G0699 Trochodendron aralioides HOM05D000187 ORTHO05D000926 1.1e-09 67.4 48 66.7
TAR633G1186 Trochodendron aralioides HOM05D000187 ORTHO05D000926 1.1e-09 67.4 55 65.5
ECA233G4076 Erigeron canadensis HOM05D000187 ORTHO05D000926 2.5e-09 66.2 48 66.7
MBI01_g39017_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000926 4.2e-09 65.5 48 66.7
PSO339G4067 Papaver somniferum HOM05D000187 ORTHO05D000926 7.2e-09 64.7 49 67.3
PSO384G0187 Papaver somniferum HOM05D000187 ORTHO05D000926 7.2e-09 64.7 49 67.3
Hund22052 Selenicereus undatus HOM05D000187 ORTHO05D000926 7.2e-09 64.7 56 64.3
VMungo1080G0637 Vigna mungo HOM05D000187 ORTHO05D000926 7.2e-09 64.7 50 66.0
EL10Ac4g10290 Beta vulgaris HOM05D000187 ORTHO05D000926 9.4e-09 64.3 48 62.5
TAR636G0766 Trochodendron aralioides HOM05D000187 ORTHO05D000926 9.4e-09 64.3 48 64.6
SGA_v2.0_scaffold247G44864 Striga asiatica HOM05D000187 ORTHO05D000926 1.2e-08 63.9 48 66.7
DCAR_029667 Daucus carota HOM05D000187 ORTHO05D000926 1.6e-08 63.5 50 64.0
Phvul.L009743 Phaseolus vulgaris HOM05D000187 ORTHO05D000926 1.6e-08 63.5 50 62.0
RcHm_v2.0_Chr1g0315871 Rosa chinensis HOM05D000187 ORTHO05D000926 2.1e-08 63.2 48 62.5
Hund07520 Selenicereus undatus HOM05D000187 ORTHO05D000926 2.1e-08 63.2 59 55.9
Prupe.2G012300 Prunus persica HOM05D000187 ORTHO05D000926 2.7e-08 62.8 48 62.5
FvH4_7g00970 Fragaria vesca HOM05D000187 ORTHO05D000926 3.6e-08 62.4 48 60.4
FAN06G3817 Fragaria x ananassa HOM05D000187 ORTHO05D000926 3.6e-08 62.4 45 68.9
FAN10G2495 Fragaria x ananassa HOM05D000187 ORTHO05D000926 3.6e-08 62.4 45 68.9
Lsat_1_v5_gn_1_66240 Lactuca sativa HOM05D000187 ORTHO05D000926 3.6e-08 62.4 48 58.3
MD07G1009300 Malus domestica HOM05D000187 ORTHO05D000926 3.6e-08 62.4 48 62.5
Oeu001472.1 Olea europaea HOM05D000187 ORTHO05D000926 4.7e-08 62.0 48 60.4
AUR62000103 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.1e-08 61.6 48 64.6
AUR62044099 Chenopodium quinoa HOM05D000187 ORTHO05D000926 6.1e-08 61.6 58 58.6
Aqoxy1G00201 Aquilegia oxysepala HOM05D000187 ORTHO05D000926 8.0e-08 61.2 49 65.3
MD02G1313100 Malus domestica HOM05D000187 ORTHO05D000926 8.0e-08 61.2 48 62.5
Hund03663 Selenicereus undatus HOM05D000187 ORTHO05D000926 8.0e-08 61.2 50 58.0
Sopen01g034140 Solanum pennellii HOM05D000187 ORTHO05D000926 8.0e-08 61.2 49 65.3
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.0e-07 60.8 51 64.7
Solyc01g087060.4 Solanum lycopersicum HOM05D000187 ORTHO05D000926 1.0e-07 60.8 49 65.3
TAR623G0162 Trochodendron aralioides HOM05D000187 ORTHO05D000926 1.0e-07 60.8 43 67.4
MSTRG.21386 Avicennia marina HOM05D000187 ORTHO05D000926 1.4e-07 60.5 48 62.5
PGSC0003DMG400006807 Solanum tuberosum HOM05D000187 ORTHO05D000926 1.4e-07 60.5 49 65.3
FAN01G2937 Fragaria x ananassa HOM05D010776 ORTHO05D000926 1.8e-07 60.1 45 66.7
Peaxi162Scf00428g00418 Petunia axillaris HOM05D000187 ORTHO05D000926 2.3e-07 59.7 49 65.3
QL04p007020 Quercus lobata HOM05D000187 ORTHO05D000926 2.3e-07 59.7 46 65.2
Nitab4.5_0000634g0120 Nicotiana tabacum HOM05D000187 ORTHO05D000926 3.0e-07 59.3 43 69.8
Nitab4.5_0002477g0030 Nicotiana tabacum HOM05D000187 ORTHO05D000926 3.0e-07 59.3 43 69.8
AUR62009379 Chenopodium quinoa HOM05D000187 ORTHO05D000926 4.0e-07 58.9 57 61.4
QL04p007307 Quercus lobata HOM05D000187 ORTHO05D000926 4.0e-07 58.9 43 69.8
CiPaw.13G004000 Carya illinoinensis HOM05D000187 ORTHO05D000926 6.7e-07 58.2 49 65.3
Aqoxy2G00119 Aquilegia oxysepala HOM05D000187 ORTHO05D000926 8.8e-07 57.8 49 61.2
EL10Ac2g04318 Beta vulgaris HOM05D000187 ORTHO05D000926 8.8e-07 57.8 51 60.8
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 8.8e-07 57.8 48 56.2
Dinv43450 Davidia involucrata HOM05D000187 ORTHO05D000926 8.8e-07 57.8 88 40.9
Sc10g0000040 Simmondsia chinensis HOM05D000187 ORTHO05D000926 8.8e-07 57.8 51 60.8
CDE05G3466 Ceratophyllum demersum HOM05D000187 ORTHO05D000926 1.2e-06 57.4 48 56.2
Dinv09360 Davidia involucrata HOM05D000187 ORTHO05D000926 1.2e-06 57.4 50 56.0
Glyma.12G237700 Glycine max HOM05D000187 ORTHO05D000926 1.2e-06 57.4 49 65.3
Lj3g0016217 Lotus japonicus HOM05D000187 ORTHO05D000926 1.2e-06 57.4 48 54.2
MBI04_g00299_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000926 1.2e-06 57.4 48 54.2
Manes.10G143800 Manihot esculenta HOM05D000187 ORTHO05D000926 1.5e-06 57.0 48 60.4
Rhsim01G0129800 Rhododendron simsii HOM05D000187 ORTHO05D000926 1.5e-06 57.0 48 56.2
SalBow5G3495 Salvia bowleyana HOM05D000187 ORTHO05D000926 1.5e-06 57.0 49 61.2
SGA_v2.0_scaffold119G32725 Striga asiatica HOM05D000187 ORTHO05D000926 1.5e-06 57.0 55 56.4
CANSAT80G2426 Cannabis sativa HOM05D000187 ORTHO05D000926 2.0e-06 56.6 49 63.3
Ciclev10032570m.g Citrus clementina HOM05D000187 ORTHO05D000926 2.0e-06 56.6 49 65.3
Duzib138G0898 Durio zibethinus HOM05D000187 ORTHO05D000926 2.0e-06 56.6 48 58.3
Eucgr.J01268 Eucalyptus grandis HOM05D000187 ORTHO05D000926 2.0e-06 56.6 48 54.2
SGA_v2.0_scaffold10G05377 Striga asiatica HOM05D000187 ORTHO05D000926 2.0e-06 56.6 54 50.0
Cc02_g27840 Coffea canephora HOM05D000187 ORTHO05D000926 2.6e-06 56.2 48 58.3
Oeu021766.3 Olea europaea HOM05D000187 ORTHO05D000926 2.6e-06 56.2 48 52.1
TWI73G0757 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 2.6e-06 56.2 49 65.3
GSVIVG01032082001 Vitis vinifera HOM05D000187 ORTHO05D000926 2.6e-06 56.2 49 63.3
Ca_23865_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000926 3.3e-06 55.8 48 54.2
Glyma.13G203300 Glycine max HOM05D000187 ORTHO05D000926 3.3e-06 55.8 48 54.2
Phvul.011G213300 Phaseolus vulgaris HOM05D000187 ORTHO05D000926 3.3e-06 55.8 48 54.2
vmacro21183 Vaccinium macrocarpon HOM05D000187 ORTHO05D000926 3.3e-06 55.8 48 56.2
VMungo1127G0029 Vigna mungo HOM05D000187 ORTHO05D000926 3.3e-06 55.8 48 54.2
Migut.F01141 Erythranthe guttata HOM05D000187 ORTHO05D000926 4.4e-06 55.5 53 49.1
Lalb_Chr19g0132201 Lupinus albus HOM05D000187 ORTHO05D000926 4.4e-06 55.5 48 52.1
Nitab4.5_0000694g0030 Nicotiana tabacum HOM05D001164 ORTHO05D001031 4.4e-06 55.5 81 44.4
TWI09G1358 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 4.4e-06 55.5 48 66.7
Atru.chr11.2655 Acer truncatum HOM05D000187 ORTHO05D000926 5.7e-06 55.1 49 65.3
Actinidia21556 Actinidia chinensis HOM05D000673 ORTHO05D000926 5.7e-06 55.1 48 54.2
BcaB02g08055 Brassica carinata HOM05D000187 ORTHO05D000926 5.7e-06 55.1 54 50.0
PGR031G0513 Punica granatum HOM05D000187 ORTHO05D000926 5.7e-06 55.1 48 56.2
Duzib268G1602 Durio zibethinus HOM05D000187 ORTHO05D000926 7.5e-06 54.7 49 63.3
Psat4g147360 Pisum sativum HOM05D000187 ORTHO05D000926 7.5e-06 54.7 48 54.2
AL5G46390 Arabidopsis lyrata HOM05D000187 ORTHO05D000926 9.7e-06 54.3 55 54.5
AT3G63530 Arabidopsis thaliana HOM05D000187 ORTHO05D000926 9.7e-06 54.3 55 54.5
arahy.Tifrunner.gnm1.ann1.AJX1BJ Arachis hypogaea HOM05D000187 ORTHO05D000926 9.7e-06 54.3 48 54.2
arahy.Tifrunner.gnm1.ann1.BBR3FV Arachis hypogaea HOM05D000187 ORTHO05D000926 9.7e-06 54.3 48 54.2
CARHR291440 Cardamine hirsuta HOM05D000187 ORTHO05D000926 9.7e-06 54.3 55 54.5
ECA248G3044 Erigeron canadensis HOM05D000187 ORTHO05D000926 9.7e-06 54.3 48 52.1
Sabra09G0045900 Salix brachista HOM05D000187 ORTHO05D000926 9.7e-06 54.3 48 54.2


User provided reference genes

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