Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.8e-64 248.4 124 100.0
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.4e-62 241.5 124 96.8
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.7e-61 239.2 123 95.9
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.5e-59 231.5 124 92.7
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 1.0e-58 229.9 124 91.9
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.0e-58 229.9 124 91.9
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 2.3e-58 228.8 124 90.3
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.2e-54 216.5 124 83.9
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 2.0e-54 215.7 124 83.1
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 2.0e-54 215.7 124 83.1
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 2.0e-54 215.7 124 83.1
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 2.0e-54 215.7 124 83.1
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 2.0e-54 215.7 124 83.1
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 2.0e-54 215.7 124 83.9
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 2.6e-54 215.3 124 83.9
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 2.6e-54 215.3 124 83.9
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 3.4e-54 214.9 122 83.6
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 3.4e-54 214.9 124 83.1
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 4.5e-54 214.5 124 82.3
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 5.8e-54 214.2 111 94.6
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 7.6e-54 213.8 121 86.8
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 1.3e-53 213.0 124 82.3
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 2.2e-53 212.2 124 83.1
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 3.8e-53 211.5 124 83.1
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 8.4e-53 210.3 123 82.1
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 2.5e-52 208.8 122 82.0
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 3.2e-52 208.4 122 82.8
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 4.2e-52 208.0 123 81.3
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 5.5e-52 207.6 122 79.5
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 5.5e-52 207.6 124 85.5
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 9.3e-52 206.8 120 80.8
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 9.3e-52 206.8 120 80.8
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.2e-51 206.5 121 81.8
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 1.6e-51 206.1 119 84.9
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.7e-51 205.3 109 92.7
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 4.6e-51 204.5 122 79.5
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 6.1e-51 204.1 123 82.1
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 6.1e-51 204.1 122 77.9
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 6.1e-51 204.1 121 81.0
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 6.1e-51 204.1 123 78.9
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 7.9e-51 203.8 123 78.0
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 7.9e-51 203.8 120 82.5
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.0e-50 203.4 122 80.3
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 1.0e-50 203.4 120 82.5
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.0e-50 203.4 123 78.9
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 1.3e-50 203.0 119 80.7
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 1.3e-50 203.0 122 77.9
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 2.3e-50 202.2 122 78.7
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 81.5
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 81.5
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 3.9e-50 201.4 120 80.8
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 3.9e-50 201.4 124 78.2
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 3.9e-50 201.4 122 77.0
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.1e-50 201.1 120 80.0
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 6.7e-50 200.7 121 78.5
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 6.7e-50 200.7 122 78.7
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 6.7e-50 200.7 122 77.9
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 6.7e-50 200.7 120 81.7
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.5e-49 199.5 120 79.2
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 1.5e-49 199.5 122 77.0
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.9e-49 199.1 124 75.8
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.9e-49 199.1 119 83.2
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 2.5e-49 198.7 122 75.4
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.3e-49 198.4 120 78.3
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.3e-49 198.4 120 78.3
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 3.3e-49 198.4 122 77.9
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 4.3e-49 198.0 124 75.8
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 5.7e-49 197.6 121 76.9
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 7.4e-49 197.2 154 68.2
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 7.4e-49 197.2 119 79.0
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 9.7e-49 196.8 123 75.6
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 9.7e-49 196.8 123 76.4
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 1.3e-48 196.4 122 77.0
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 1.3e-48 196.4 123 75.6
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.2e-48 195.7 122 76.2
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 3.7e-48 194.9 122 76.2
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 3.7e-48 194.9 122 76.2
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 3.7e-48 194.9 122 75.4
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 4.8e-48 194.5 119 77.3
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 4.8e-48 194.5 123 74.8
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 4.8e-48 194.5 122 73.8
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 6.3e-48 194.1 122 75.4
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 8.2e-48 193.7 122 76.2
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 8.2e-48 193.7 123 74.8
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.1e-47 193.4 120 76.7
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.1e-47 193.4 120 77.5
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 1.1e-47 193.4 122 75.4
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.4e-47 193.0 125 75.2
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 2.4e-47 192.2 124 78.2
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 2.4e-47 192.2 123 73.2
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.4e-47 192.2 123 74.0
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 2.4e-47 192.2 124 75.8
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 3.1e-47 191.8 124 75.8
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 4.1e-47 191.4 119 76.5
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 6.9e-47 190.7 124 71.8
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 1.2e-46 189.9 120 75.0
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 5.9e-46 187.6 124 71.0
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 7.7e-46 187.2 123 70.7
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.7e-45 186.0 124 71.0
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 2.2e-45 185.7 120 72.5
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 2.9e-45 185.3 120 76.7
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.0e-45 184.5 124 71.8
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.9e-44 182.6 123 70.7
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.5e-44 182.2 123 71.5
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 3.2e-44 181.8 123 74.0
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.2e-44 181.8 123 71.5
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 9.4e-44 180.3 123 70.7
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 1.6e-43 179.5 120 71.7
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 3.6e-43 178.3 129 65.9
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.9e-42 174.9 122 71.3
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.9e-42 174.9 122 71.3
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 6.7e-42 174.1 124 66.1
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 8.8e-42 173.7 121 72.7
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 8.8e-42 173.7 120 66.7
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 2.5e-41 172.2 124 65.3
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.3e-41 171.8 124 65.3
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 4.8e-40 167.9 123 66.7
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 1.1e-39 166.8 108 75.9
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.2e-38 163.3 121 67.8
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 1.5e-38 162.9 121 66.9
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 2.6e-38 162.2 122 66.4
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 5.9e-38 161.0 111 70.3
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 1.3e-37 159.8 120 69.2
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 2.9e-37 158.7 100 76.0
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 3.8e-37 158.3 121 63.6
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 1.2e-35 153.3 121 58.7
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.0e-34 150.2 95 73.7
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 5.1e-34 147.9 121 63.6
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.2e-30 136.7 83 75.9
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 5.9e-30 134.4 122 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 1.9e-28 129.4 122 52.5
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 9.4e-28 127.1 90 65.6
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 1.6e-27 126.3 82 76.8
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 8.0e-27 124.0 123 55.3
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 5.2e-26 121.3 83 71.1
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.3e-24 116.7 62 88.7
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.7e-24 116.3 62 90.3
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 3.7e-24 115.2 115 53.9
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 3.7e-24 115.2 70 77.1
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 8.2e-24 114.0 93 61.3
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 5.3e-23 111.3 100 60.0
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 7.7e-22 107.5 60 81.7
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.3e-21 106.7 88 61.4
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 4.0e-18 95.1 78 61.5
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 2.0e-14 82.8 61 63.9
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 2.7e-14 82.4 104 49.0
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 3.0e-10 68.9 43 74.4
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 9.8e-09 63.9 111 35.1
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 2.8e-08 62.4 112 32.1
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.4e-07 60.1 39 64.1
CBR_g37451 Chara braunii HOM05D004883 ORTHO05D005766 7.7e-06 54.3 54 55.6


User provided reference genes

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