Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.5e-280 967.2 474 100.0
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.0e-253 876.7 474 93.2
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 4.3e-246 854.4 499 87.0
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.4e-227 791.6 496 82.1
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.4e-226 787.3 499 81.6
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.3e-198 695.3 500 74.4
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.1e-180 634.0 364 88.5
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.0e-179 632.9 364 88.2
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 2.6e-179 632.5 368 87.5
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 7.5e-158 561.2 497 64.0
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.0e-152 541.2 354 78.8
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 6.8e-151 538.1 498 60.6
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 3.4e-142 509.2 497 59.8
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.9e-139 498.4 330 79.4
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 2.0e-134 483.4 280 86.1
Gorai.010G000700 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.0e-122 444.5 293 80.2
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 5.6e-81 305.8 223 69.1
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 7.6e-70 268.9 541 36.6
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 5.0e-69 266.2 454 42.3
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.9e-68 264.2 535 36.4
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 2.7e-67 260.4 196 70.4
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 2.7e-67 260.4 479 40.1
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 5.1e-66 256.1 487 39.8
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 8.8e-66 255.4 590 34.9
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 4.8e-64 249.6 355 45.6
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 4.8e-64 249.6 470 40.9
Gohir.D13G241450 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.8e-64 249.6 141 86.5
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 8.2e-64 248.8 452 39.4
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 1.5e-62 244.6 218 60.6
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 5.9e-62 242.7 208 61.5
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 5.0e-61 239.6 450 38.4
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 6.1e-59 232.6 291 48.5
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 1.0e-58 231.9 289 48.4
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 1.8e-58 231.1 225 54.7
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 2.3e-58 230.7 248 52.0
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 3.0e-58 230.3 446 38.8
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 5.1e-58 229.6 176 63.1
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 5.1e-58 229.6 375 41.9
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 2.0e-57 227.6 475 37.5
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 2.8e-56 223.8 255 50.2
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 3.7e-56 223.4 257 50.6
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 6.3e-56 222.6 214 54.2
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 6.3e-56 222.6 176 63.6
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 1.1e-55 221.9 251 50.6
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.4e-55 221.5 259 49.8
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 1.8e-55 221.1 180 62.8
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 2.4e-55 220.7 158 65.8
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 2.4e-55 220.7 252 49.2
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 2.4e-55 220.7 290 45.9
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 2.4e-55 220.7 181 62.4
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 3.1e-55 220.3 196 58.7
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 4.1e-55 219.9 461 36.2
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 4.1e-55 219.9 207 57.5
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 4.1e-55 219.9 456 36.0
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 5.3e-55 219.5 199 56.8
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 7.0e-55 219.2 201 59.2
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 9.1e-55 218.8 229 52.0
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 1.2e-54 218.4 209 57.4
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 1.2e-54 218.4 142 72.5
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 1.2e-54 218.4 138 74.6
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 1.2e-54 218.4 175 61.1
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.5e-54 218.0 200 56.0
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.5e-54 218.0 200 56.0
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 2.0e-54 217.6 460 36.3
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 2.0e-54 217.6 190 58.4
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 2.6e-54 217.2 193 58.0
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 3.4e-54 216.9 453 37.1
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 3.4e-54 216.9 277 46.6
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 3.4e-54 216.9 235 50.6
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 4.5e-54 216.5 159 64.8
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 5.9e-54 216.1 211 53.6
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 5.9e-54 216.1 453 37.1
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 5.9e-54 216.1 453 37.5
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 1.0e-53 215.3 211 54.5
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 1.0e-53 215.3 211 54.5
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-53 214.9 238 49.2
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-53 214.9 193 56.5
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 1.3e-53 214.9 193 56.5
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 1.3e-53 214.9 470 35.5
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 1.7e-53 214.5 243 49.4
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 1.7e-53 214.5 200 57.0
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 2.2e-53 214.2 182 58.8
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 2.2e-53 214.2 165 64.8
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 2.9e-53 213.8 247 50.6
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 5.0e-53 213.0 184 59.8
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 5.0e-53 213.0 235 50.2
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 6.5e-53 212.6 186 60.2
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 6.5e-53 212.6 197 55.3
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 8.5e-53 212.2 190 56.8
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 8.5e-53 212.2 213 54.5
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 2.5e-52 210.7 239 50.6
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 4.2e-52 209.9 180 61.1
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 5.5e-52 209.5 208 54.3
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 7.2e-52 209.1 154 66.9
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 7.2e-52 209.1 229 53.3
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 7.2e-52 209.1 181 58.0
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 2.1e-51 207.6 220 51.4
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.7e-51 207.2 231 50.2
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 3.6e-51 206.8 202 54.0
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 8.0e-51 205.7 213 54.5
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 1.0e-50 205.3 219 52.1
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 1.4e-50 204.9 176 57.4
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 1.8e-50 204.5 457 35.9
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 2.0e-49 201.1 170 58.8
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 7.4e-49 199.1 215 51.2
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 2.2e-48 197.6 207 52.2
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 3.7e-48 196.8 195 53.8
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 8.2e-48 195.7 180 56.7
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 3.1e-47 193.7 246 47.2
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 1.2e-46 191.8 494 32.8
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 1.6e-46 191.4 177 55.9
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 2.0e-46 191.0 208 50.5
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 2.0e-46 191.0 211 52.6
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 4.5e-46 189.9 141 68.8
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 1.7e-45 188.0 237 46.4
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 6.5e-45 186.0 180 56.1
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 3.2e-44 183.7 246 46.7
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 9.4e-44 182.2 146 61.6
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 1.6e-43 181.4 258 45.0
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 3.6e-43 180.3 220 47.7
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 3.0e-42 177.2 210 47.1
Gorai.007G217700 Gossypium raimondii HOM05D002376 ORTHO05D036218 4.0e-42 176.8 160 61.9
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 1.2e-41 175.3 157 58.6
Gohir.D11G203101 Gossypium hirsutum HOM05D002376 ORTHO05D036218 3.3e-41 173.7 160 61.2
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 4.4e-41 173.3 128 65.6
Gorai.005G000200 Gossypium raimondii HOM05D002376 ORTHO05D004654 6.3e-40 169.5 98 88.8
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 5.0e-37 159.8 141 61.0
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 8.5e-37 159.1 168 47.6
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 3.2e-36 157.1 194 41.8
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.5e-33 146.0 94 80.9
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 1.3e-32 145.2 167 50.3
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 2.8e-32 144.1 218 42.7
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 8.3e-32 142.5 183 41.0
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 5.4e-31 139.8 102 63.7
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 9.1e-31 139.0 179 41.9
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 5.9e-30 136.3 185 38.9
CBR_g20119 Chara braunii HOM05D002376 ORTHO05D004654 3.3e-28 130.6 198 38.4
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 1.6e-27 128.3 155 40.6
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 1.6e-27 128.3 182 45.6
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 2.8e-27 127.5 106 56.6
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 5.2e-26 123.2 164 41.5
CiPaw.14G052200 Carya illinoinensis HOM05D002376 ORTHO05D004654 2.8e-24 117.5 78 70.5
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 9.2e-23 112.5 103 53.4
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 1.2e-22 112.1 103 52.4
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 4.5e-22 110.2 187 42.8
MCO16G118 Micromonas commoda HOM05D002376 ORTHO05D004654 1.1e-20 105.5 127 43.3
Prupe.1G103400 Prunus persica HOM05D002376 ORTHO05D004654 1.9e-20 104.8 94 58.5
Prupe.3G073500 Prunus persica HOM05D002376 ORTHO05D004654 7.0e-15 86.3 95 49.5
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 9.2e-15 85.9 107 43.9
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 1.6e-14 85.1 179 30.2
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 3.5e-14 84.0 99 52.5
BcaC02g08132 Brassica carinata HOM05D002376 ORTHO05D004654 4.6e-14 83.6 88 52.3
BolC4t27329H Brassica oleracea HOM05D002376 ORTHO05D004654 4.6e-14 83.6 88 52.3
C07p50650 Brassica napus HOM05D002376 ORTHO05D004654 3.9e-13 80.5 84 54.8
BolC7t45569H Brassica oleracea HOM05D002376 ORTHO05D004654 3.9e-13 80.5 84 54.8
C02p16040 Brassica napus HOM05D002376 ORTHO05D004654 5.0e-13 80.1 84 54.8
C09p15830 Brassica napus HOM05D001212 ORTHO05D000246 8.6e-13 79.3 53 67.9
arahy.Tifrunner.gnm1.ann1.P4WV5Z Arachis hypogaea HOM05D000138 ORTHO05D000078 1.9e-12 78.2 46 78.3
SEGI_33829 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 1.9e-12 78.2 89 46.1
arahy.Tifrunner.gnm1.ann1.ANYB6V Arachis hypogaea HOM05D002376 ORTHO05D004654 7.3e-12 76.3 57 61.4
arahy.Tifrunner.gnm1.ann1.D1TE9J Arachis hypogaea HOM05D000138 ORTHO05D000078 7.3e-12 76.3 57 61.4
arahy.Tifrunner.gnm1.ann1.S28F9G Arachis hypogaea HOM05D000138 ORTHO05D000078 7.3e-12 76.3 44 79.5
BcaC04g19883 Brassica carinata HOM05D002376 ORTHO05D004654 7.3e-12 76.3 48 70.8
arahy.Tifrunner.gnm1.ann1.C6LA65 Arachis hypogaea HOM05D002376 ORTHO05D004654 1.6e-11 75.1 46 73.9
arahy.Tifrunner.gnm1.ann1.HWE26N Arachis hypogaea HOM05D002376 ORTHO05D004654 3.1e-10 70.9 44 70.5
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 3.4e-09 67.4 88 39.8
Eucgr.C01059 Eucalyptus grandis HOM05D002376 ORTHO05D004654 3.4e-09 67.4 53 56.6
FAN26G2163 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.2e-08 64.7 50 56.0
FAN19G3001 Fragaria x ananassa HOM05D014655 ORTHO05D045933 2.9e-08 64.3 71 45.1
FvH4_7g05780 Fragaria vesca HOM05D014655 ORTHO05D045933 6.4e-08 63.2 45 60.0


User provided reference genes

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