Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 2.3e-76 288.9 155 100.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 7.9e-16 87.8 79 68.4
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.3e-15 87.0 79 67.1
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.3e-15 86.3 79 67.1
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 5.1e-15 85.1 79 69.6
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.1e-14 84.0 91 64.8
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.1e-14 84.0 79 64.6
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 7.4e-14 81.3 79 63.3
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 2.2e-13 79.7 92 58.7
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.5e-11 73.6 92 52.2
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.5e-11 73.6 95 48.4
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.3e-10 70.5 75 58.7
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.7e-10 70.1 79 54.4
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.7e-10 70.1 75 54.7
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 2.9e-10 69.3 68 57.4
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 5.0e-10 68.6 79 53.2
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 5.0e-10 68.6 73 54.8
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 6.5e-10 68.2 79 54.4
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 6.5e-10 68.2 79 54.4
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 6.5e-10 68.2 91 50.5
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 8.5e-10 67.8 74 52.7
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.4e-09 67.0 93 53.8
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.9e-09 66.6 90 47.8
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.9e-09 66.6 90 47.8
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 3.2e-09 65.9 93 51.6
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.2e-09 65.9 90 48.9
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 4.2e-09 65.5 94 44.7
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 5.5e-09 65.1 90 51.1
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.2e-09 64.7 90 47.8
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 7.2e-09 64.7 81 58.0
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 7.2e-09 64.7 74 50.0
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 7.2e-09 64.7 74 50.0
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 7.2e-09 64.7 91 45.1
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 7.2e-09 64.7 91 45.1
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 9.4e-09 64.3 64 56.2
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 9.4e-09 64.3 75 52.0
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.2e-08 63.9 88 47.7
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.6e-08 63.5 86 51.2
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.6e-08 63.5 94 43.6
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 1.6e-08 63.5 97 46.4
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.6e-08 63.5 73 53.4
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 2.1e-08 63.2 91 45.1
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 2.7e-08 62.8 96 44.8
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.7e-08 62.8 94 47.9
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.6e-08 62.4 90 47.8
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.6e-08 62.4 89 47.2
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 3.6e-08 62.4 94 52.1
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 3.6e-08 62.4 84 45.2
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 6.1e-08 61.6 77 53.2
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.1e-08 61.6 90 48.9
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 6.1e-08 61.6 93 47.3
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 6.1e-08 61.6 58 58.6
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 7.9e-08 61.2 80 48.8
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.0e-07 60.8 72 50.0
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 1.0e-07 60.8 103 40.8
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.4e-07 60.5 59 59.3
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.4e-07 60.5 96 44.8
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.3e-07 59.7 92 41.3
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 2.3e-07 59.7 94 46.8
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 3.0e-07 59.3 79 46.8
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 3.0e-07 59.3 89 43.8
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 3.0e-07 59.3 92 44.6
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.9e-07 58.9 56 57.1
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.9e-07 58.9 56 57.1
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 3.9e-07 58.9 89 43.8
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 3.9e-07 58.9 93 44.1
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 5.1e-07 58.5 90 46.7
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 6.7e-07 58.2 89 41.6
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 6.7e-07 58.2 95 44.2
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 6.7e-07 58.2 92 41.3
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.1e-06 57.4 89 46.1
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.0e-06 56.6 93 41.9
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 4.3e-06 55.5 59 57.6
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 4.3e-06 55.5 93 47.3
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 5.7e-06 55.1 75 46.7
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 5.7e-06 55.1 71 52.1
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 7.4e-06 54.7 57 54.4
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 9.7e-06 54.3 73 46.6
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 9.7e-06 54.3 117 38.5


User provided reference genes

Program Settings