Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 1.7e-134 482.6 236 100.0
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 2.7e-116 422.2 236 86.9
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 9.9e-111 403.7 236 84.7
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 2.4e-109 399.1 238 81.5
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 9.6e-106 387.1 236 80.5
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 6.4e-102 374.4 236 76.7
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 1.0e-99 367.1 238 77.7
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 8.1e-97 357.5 222 77.5
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 2.2e-94 349.4 217 77.0
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 1.0e-91 340.5 236 73.3
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 1.1e-88 330.5 217 75.6
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 1.7e-78 296.6 217 65.9
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 1.4e-77 293.5 217 64.1
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 1.9e-77 293.1 217 63.6
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 4.2e-77 292.0 217 64.5
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 2.0e-74 283.1 217 61.8
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 2.2e-73 279.6 217 62.2
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 3.7e-73 278.9 217 63.1
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 8.2e-73 277.7 210 65.7
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 1.1e-72 277.3 217 61.8
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 1.4e-72 276.9 218 64.2
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 2.4e-72 276.2 223 60.1
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 5.3e-72 275.0 217 62.7
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 9.1e-72 274.2 221 61.1
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 1.5e-71 273.5 219 60.7
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 1.5e-71 273.5 217 63.1
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 1.0e-70 270.8 195 66.2
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 2.2e-70 269.6 219 58.4
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 2.9e-70 269.2 217 55.8
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 1.1e-69 267.3 217 59.0
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 1.1e-69 267.3 217 59.0
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 1.4e-69 266.9 223 58.3
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 4.2e-69 265.4 218 60.1
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 4.2e-69 265.4 217 59.4
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 4.2e-69 265.4 217 62.2
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 4.2e-69 265.4 222 58.6
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.2e-68 263.8 219 58.9
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 1.6e-68 263.5 217 58.5
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.6e-68 263.5 217 59.0
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 6.1e-68 261.5 217 56.2
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 7.9e-68 261.2 217 58.5
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 1.4e-67 260.4 217 58.1
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 1.4e-67 260.4 215 61.4
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 1.8e-67 260.0 233 56.2
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 6.7e-67 258.1 195 61.5
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 6.7e-67 258.1 218 58.7
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 8.8e-67 257.7 218 57.8
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 8.8e-67 257.7 217 57.6
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 1.5e-66 256.9 218 58.7
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 2.0e-66 256.5 217 56.7
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 2.6e-66 256.1 217 58.5
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 3.3e-66 255.8 220 55.9
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 4.4e-66 255.4 206 60.7
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 4.4e-66 255.4 219 57.5
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 5.7e-66 255.0 182 65.9
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 5.7e-66 255.0 222 58.6
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 7.4e-66 254.6 217 58.5
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 1.7e-65 253.4 217 57.6
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 1.1e-64 250.8 159 69.8
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 1.8e-64 250.0 213 61.0
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 3.1e-64 249.2 218 58.7
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 9.1e-64 247.7 195 58.5
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 1.5e-63 246.9 218 58.7
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 2.6e-63 246.1 218 58.3
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 2.6e-63 246.1 158 72.8
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 4.5e-63 245.4 161 71.4
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 5.9e-63 245.0 218 59.2
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 7.7e-63 244.6 217 58.1
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 1.0e-62 244.2 222 55.4
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 6.5e-62 241.5 218 57.8
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 6.5e-62 241.5 171 65.5
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 1.9e-61 240.0 212 56.1
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 4.2e-61 238.8 217 55.3
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 9.4e-61 237.7 175 66.3
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 1.6e-60 236.9 223 53.4
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 2.7e-60 236.1 219 57.5
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 2.7e-60 236.1 218 58.3
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 3.6e-60 235.7 219 57.5
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 3.6e-60 235.7 219 57.5
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.4e-59 233.8 226 54.9
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 2.3e-59 233.0 218 57.3
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 6.7e-59 231.5 219 54.8
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 6.7e-59 231.5 223 53.4
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 6.7e-59 231.5 219 55.3
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 3.3e-58 229.2 219 57.1
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 5.9e-55 218.4 218 50.9
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 1.9e-53 213.4 140 70.7
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 9.4e-53 211.1 157 59.2
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 1.2e-52 210.7 199 55.3
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 8.8e-51 204.5 161 57.8
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 9.1e-48 194.5 158 58.9
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 3.6e-44 182.6 224 42.4
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 5.2e-43 178.7 161 54.7
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 2.6e-42 176.4 134 56.0
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 2.8e-41 172.9 151 53.0
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 1.8e-40 170.2 135 53.3
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 1.6e-36 157.1 149 51.7
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 6.8e-35 151.8 139 50.4
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 1.5e-34 150.6 179 47.5
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 7.0e-32 141.7 138 47.1
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 7.0e-32 141.7 142 52.8
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 6.8e-27 125.2 79 72.2
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 4.9e-25 119.0 188 33.5
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 1.1e-19 101.3 147 38.8
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 8.9e-19 98.2 52 78.8
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 3.3e-13 79.7 53 71.7
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 2.6e-10 70.1 49 63.3
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 9.2e-08 61.6 74 43.2


User provided reference genes

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