Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 3.4e-284 981.1 539 100.0
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.9e-210 736.1 538 79.0
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 9.1e-160 567.8 528 65.2
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.8e-155 553.5 547 65.3
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 4.3e-117 426.0 536 53.7
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 4.4e-106 389.4 755 40.1
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 5.8e-106 389.0 603 46.9
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.9e-105 386.7 553 52.3
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.4e-67 260.8 672 37.6
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 2.2e-65 254.2 683 37.5
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 5.8e-58 229.6 837 30.5
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.5e-50 204.9 577 36.9
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.9e-49 200.7 570 36.1
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.2e-48 196.8 579 33.5
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.6e-47 193.7 285 46.0
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 6.1e-47 193.0 510 35.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 3.9e-46 190.3 608 34.4
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 6.3e-44 183.0 579 35.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.1e-43 182.2 605 32.4
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.5e-42 178.3 281 42.7
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 3.2e-40 170.6 382 35.9
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.6e-39 168.3 905 27.3
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.4e-38 165.2 564 33.5
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.3e-38 164.5 581 31.5
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.6e-37 161.0 545 33.8
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.3e-37 160.6 816 27.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 5.7e-37 159.8 531 34.3
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 2.8e-36 157.5 578 31.7
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 8.2e-36 156.0 585 30.1
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.1e-35 155.6 597 31.7
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.3e-33 148.7 609 30.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 2.2e-33 147.9 274 39.1
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 2.9e-33 147.5 175 56.6
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.8e-33 147.1 277 44.4
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 8.5e-33 146.0 594 30.3
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 4.2e-32 143.7 345 34.2
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 5.5e-32 143.3 575 30.3
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 4.7e-31 140.2 335 36.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 4.0e-30 137.1 441 33.6
TPR.G14317 Trifolium pratense HOM05D004189 ORTHO05D017062 6.7e-30 136.3 458 33.0
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.1e-29 135.6 649 30.4
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 1.1e-29 135.6 215 48.4
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.0e-29 134.8 632 29.4
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 3.3e-29 134.0 557 32.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.8e-27 128.3 309 35.3
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.8e-27 128.3 568 28.7
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.5e-26 123.6 388 31.7
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 5.9e-26 123.2 380 32.4
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 5.9e-26 123.2 616 28.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.0e-25 122.5 362 32.6
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.2e-25 121.3 450 30.2
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.1e-24 119.0 654 28.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.9e-24 118.2 355 33.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 4.2e-24 117.1 598 29.6
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.2e-24 117.1 371 32.3
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.4e-24 115.9 430 30.2
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.7e-23 114.4 370 31.6
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 6.1e-23 113.2 372 30.1
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.0e-23 112.8 502 28.7
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.4e-22 112.1 553 29.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-22 110.9 584 28.3
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 4.0e-22 110.5 145 50.3
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.0e-22 110.5 488 29.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 5.2e-22 110.2 432 29.2
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 6.8e-22 109.8 566 30.7
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.5e-21 108.6 540 29.3
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.0e-21 108.2 511 30.9
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.6e-21 107.8 445 29.2
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.4e-21 107.5 352 33.2
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 2.2e-20 104.8 538 27.1
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 3.7e-20 104.0 604 28.8
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.7e-20 104.0 494 28.9
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-19 102.4 571 25.7
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.1e-19 102.4 471 29.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-19 102.1 584 28.6
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.4e-19 102.1 584 28.6
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.6e-18 98.6 599 25.2
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.7e-18 97.8 542 26.8
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 7.7e-18 96.3 163 43.6
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-17 95.1 543 26.9
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 2.2e-17 94.7 163 42.9
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.9e-17 94.4 629 26.1
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.9e-17 94.4 439 29.6
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 2.9e-17 94.4 627 28.5
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.9e-16 91.7 593 28.3
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.9e-16 91.7 620 27.1
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.9e-16 91.7 387 30.0
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 2.5e-16 91.3 401 28.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.5e-16 91.3 620 27.4
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 3.2e-16 90.9 185 37.3
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 7.2e-16 89.7 487 26.5
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.1e-15 88.2 418 27.8
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.1e-15 88.2 584 25.3
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.6e-15 87.4 470 26.0
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 4.7e-15 87.0 245 36.3
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 6.1e-15 86.7 608 26.0
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 6.1e-15 86.7 317 30.3
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.0e-14 85.9 413 27.1
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.4e-14 85.5 300 30.3
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.8e-14 85.1 485 27.8
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 3.0e-14 84.3 152 42.1
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 6.8e-14 83.2 234 34.6
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 8.8e-14 82.8 630 24.6
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.2e-13 82.4 400 28.0
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.2e-13 82.4 152 41.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.2e-13 82.4 518 26.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.5e-13 82.0 603 28.4
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 3.4e-13 80.9 361 29.4
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.4e-13 80.9 548 25.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.4e-13 80.5 197 35.0
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 9.8e-13 79.3 513 28.1
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 9.8e-13 79.3 210 34.3
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.8e-12 77.8 160 40.6
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 3.7e-12 77.4 491 25.9
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.7e-12 77.4 521 25.1
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 8.3e-12 76.3 472 27.3
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.8e-11 75.1 579 25.9
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.8e-11 75.1 543 27.1
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.4e-11 74.7 560 25.0
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.1e-11 74.3 513 26.1
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 7.0e-11 73.2 594 25.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 9.1e-11 72.8 587 25.6
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.2e-10 72.4 598 24.9
Medtr1g100607 Medicago truncatula HOM05D004189 ORTHO05D004092 1.6e-10 72.0 199 35.2
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.0e-10 71.6 570 24.7
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.0e-10 71.6 444 25.9
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.5e-10 70.9 203 32.5
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.3e-09 68.9 173 35.3
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.9e-09 67.8 601 24.8
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 6.6e-09 66.6 576 26.2
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 6.6e-09 66.6 356 27.5
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 8.6e-09 66.2 483 29.2
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.5e-08 64.7 191 33.0
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 5.6e-08 63.5 522 24.3
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 2.8e-07 61.2 263 28.5
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.7e-07 60.5 82 43.9
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 1.4e-06 58.9 80 43.8
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.8e-06 58.5 530 23.6
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 2.3e-06 58.2 83 42.2
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-06 58.2 83 42.2
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 3.0e-06 57.8 253 29.6
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 3.0e-06 57.8 509 26.3
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 4.0e-06 57.4 114 34.2
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 5.2e-06 57.0 181 35.4
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 5.2e-06 57.0 90 41.1


User provided reference genes

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