Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 3.9e-108 396.4 192 100.0
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 5.6e-99 365.9 191 91.1
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 2.5e-91 340.5 192 81.8
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 1.2e-90 338.2 193 82.9
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 3.1e-89 333.6 191 80.6
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 2.2e-87 327.4 174 89.7
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 2.9e-87 327.0 193 79.8
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 8.4e-87 325.5 192 77.6
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 5.4e-86 322.8 191 78.5
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 3.3e-83 313.5 174 83.9
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 4.8e-82 309.7 221 68.8
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 1.1e-73 282.0 192 68.8
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 2.2e-71 274.2 192 67.2
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 4.2e-70 270.0 189 67.2
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 4.2e-70 270.0 199 66.8
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 3.5e-69 266.9 191 68.6
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 3.5e-69 266.9 192 66.1
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 3.5e-69 266.9 192 65.6
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 7.9e-69 265.8 191 65.4
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 1.0e-68 265.4 190 67.9
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 3.0e-68 263.8 187 66.3
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 3.0e-68 263.8 188 63.8
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 6.7e-68 262.7 192 65.6
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 3.3e-67 260.4 173 69.9
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 5.6e-67 259.6 192 64.1
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 7.4e-67 259.2 186 65.1
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 1.3e-66 258.5 181 66.3
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 1.3e-66 258.5 194 64.9
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 1.6e-66 258.1 187 65.8
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 2.1e-66 257.7 193 65.8
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 2.8e-66 257.3 192 62.0
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 3.7e-66 256.9 194 64.4
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 3.7e-66 256.9 175 65.7
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 8.2e-66 255.8 187 63.1
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.8e-65 254.6 187 64.7
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 3.1e-65 253.8 187 62.6
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 3.1e-65 253.8 187 64.7
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 4.0e-65 253.4 191 63.9
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 5.3e-65 253.1 194 63.4
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 6.9e-65 252.7 168 67.3
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 4.5e-64 250.0 168 66.1
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 5.8e-64 249.6 168 66.1
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 1.3e-63 248.4 187 61.5
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 2.2e-63 247.7 192 60.9
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 2.9e-63 247.3 185 60.0
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 4.9e-63 246.5 193 57.0
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 8.4e-63 245.7 181 64.1
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 1.9e-62 244.6 181 63.5
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 3.2e-62 243.8 192 57.3
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 3.2e-62 243.8 194 62.9
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 4.2e-62 243.4 177 63.8
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 3.5e-61 240.4 215 57.2
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 2.3e-60 237.7 169 66.9
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 3.9e-60 236.9 192 58.3
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 6.7e-60 236.1 166 66.3
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 1.9e-59 234.6 198 57.1
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 1.9e-59 234.6 190 61.1
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 9.7e-59 232.3 185 56.2
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 2.8e-58 230.7 161 64.6
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 1.1e-57 228.8 180 58.3
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 2.4e-57 227.6 173 59.0
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 3.1e-57 227.3 173 58.4
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 4.1e-57 226.9 165 67.3
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 5.9e-56 223.0 155 64.5
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 1.7e-55 221.5 155 63.9
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 1.7e-55 221.5 225 49.8
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 2.2e-55 221.1 155 63.9
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 2.2e-55 221.1 175 60.0
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 8.5e-55 219.2 163 60.1
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 8.5e-55 219.2 163 60.1
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 1.4e-54 218.4 155 62.6
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 3.2e-54 217.2 155 61.9
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 3.2e-54 217.2 155 62.6
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 4.2e-54 216.9 161 60.9
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 5.5e-54 216.5 155 61.9
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 5.5e-54 216.5 159 60.4
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 7.2e-54 216.1 155 61.9
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 7.2e-54 216.1 161 61.5
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 3.0e-52 210.7 190 53.2
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 5.1e-52 209.9 169 59.2
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 5.7e-51 206.5 153 60.8
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 9.7e-51 205.7 153 61.4
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 2.4e-49 201.1 136 66.2
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 1.0e-47 195.7 187 51.9
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 1.3e-47 195.3 129 72.1
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 3.8e-47 193.7 157 58.0
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 3.8e-47 193.7 134 67.2
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 1.4e-41 175.3 199 46.7
AUR62000579 Chenopodium quinoa HOM05D006866 ORTHO05D008689 2.6e-40 171.0 189 47.1
PGR004G0545 Punica granatum HOM05D006866 ORTHO05D008689 4.7e-37 160.2 160 49.4
HanXRQChr10g0279011 Helianthus annuus HOM05D006866 ORTHO05D008689 6.7e-36 156.4 129 57.4
Lsat_1_v5_gn_6_52341 Lactuca sativa HOM05D006866 ORTHO05D008689 1.3e-31 142.1 123 57.7
Os02g0170000 Oryza sativa ssp. japonica HOM05D006866 ORTHO05D008689 3.6e-29 134.0 149 47.7
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 5.9e-24 116.7 74 71.6
Sabra12G0092900 Salix brachista HOM05D000009 ORTHO05D000008 1.7e-23 115.2 130 45.4
SMO165G0132 Selaginella moellendorffii HOM05D006866 ORTHO05D008689 8.0e-21 106.3 130 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1444 Anthoceros agrestis HOM05D006866 ORTHO05D008689 6.8e-20 103.2 128 36.7
Pp3c6_26210 Physcomitrium patens HOM05D006866 ORTHO05D008689 1.7e-18 98.6 139 36.7
Mapoly0002s0014 Marchantia polymorpha HOM05D006866 ORTHO05D008689 2.8e-18 97.8 136 35.3
Pp3c16_5890 Physcomitrium patens HOM05D006866 ORTHO05D008689 1.2e-16 92.4 131 36.6
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 6.6e-15 86.7 67 61.2
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.9e-14 85.1 52 73.1
RhsimUnG0235100 Rhododendron simsii HOM05D006866 ORTHO05D008689 2.5e-14 84.7 54 70.4
Lsat_1_v5_gn_3_50301 Lactuca sativa HOM05D006866 ORTHO05D008689 6.1e-13 80.1 52 67.3
Lsat_1_v5_gn_8_128381 Lactuca sativa HOM05D006866 ORTHO05D008689 2.6e-11 74.7 108 40.7
Lj5g0020884 Lotus japonicus HOM05D000132 ORTHO05D000058 9.2e-09 66.2 35 94.3
CSS0001056 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.7e-08 64.7 38 81.6
CSS0048441 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.7e-08 64.7 38 81.6
Cfa008015 Carpinus fangiana HOM05D000082 ORTHO05D008689 3.5e-08 64.3 103 38.8
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 4.5e-08 63.9 41 68.3
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 4.5e-08 63.9 37 75.7
CARHR141110 Cardamine hirsuta HOM05D006866 ORTHO05D008689 5.9e-08 63.5 45 57.8
MD05G1251100 Malus domestica HOM05D006866 ORTHO05D008689 1.7e-07 62.0 36 80.6
CARHR180830 Cardamine hirsuta HOM05D006866 ORTHO05D008689 3.3e-06 57.8 50 48.0
Haze_06062 Corylus avellana HOM05D006866 ORTHO05D008689 5.6e-06 57.0 37 70.3
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 7.3e-06 56.6 66 39.4
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 7.3e-06 56.6 66 39.4


User provided reference genes

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