Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 3.7e-263 911.0 456 100.0
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 4.0e-257 891.0 456 97.6
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 7.5e-248 860.1 456 94.1
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 1.3e-247 859.4 456 93.6
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 8.8e-241 836.6 456 90.8
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 1.7e-239 832.4 456 91.0
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 4.1e-238 827.8 456 90.8
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 4.1e-238 827.8 456 90.4
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 1.6e-234 815.8 458 88.4
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 2.1e-234 815.5 458 88.4
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 1.0e-233 813.1 456 89.5
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 8.9e-233 810.1 458 88.2
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 3.9e-228 794.7 458 86.0
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 1.2e-226 789.6 456 85.7
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 1.4e-225 786.2 455 85.1
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 6.8e-225 783.9 456 85.3
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 1.2e-224 783.1 464 84.9
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 2.6e-224 781.9 456 84.6
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 4.4e-224 781.2 456 85.5
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 5.8e-224 780.8 456 85.5
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 1.3e-223 779.6 456 85.3
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 2.9e-223 778.5 456 84.9
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 2.9e-223 778.5 456 85.3
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.1e-222 776.5 456 84.9
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 4.1e-222 774.6 456 84.6
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 1.6e-221 772.7 427 88.8
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 1.6e-221 772.7 449 85.3
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 2.0e-221 772.3 457 85.1
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 2.0e-221 772.3 449 85.7
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 3.5e-221 771.5 456 84.4
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 3.5e-221 771.5 457 84.9
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 3.5e-221 771.5 457 84.9
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 6.0e-221 770.8 464 84.5
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 1.3e-220 769.6 456 82.9
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.3e-220 769.6 456 84.0
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 3.9e-220 768.1 456 84.0
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 5.0e-220 767.7 456 82.7
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 6.6e-220 767.3 456 84.0
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.1e-219 766.5 457 83.6
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 1.5e-219 766.1 427 88.8
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 5.6e-219 764.2 456 84.0
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 1.6e-218 762.7 427 87.4
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 3.6e-218 761.5 427 88.1
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 4.0e-217 758.1 461 82.4
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 6.8e-217 757.3 506 77.1
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 1.2e-216 756.5 457 82.3
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 1.5e-216 756.1 432 86.6
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 1.5e-216 756.1 457 82.3
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 2.6e-216 755.4 457 82.5
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 3.4e-216 755.0 458 81.9
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.4e-216 755.0 463 82.5
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.3e-215 753.1 437 85.8
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.7e-215 752.7 452 83.8
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 2.2e-215 752.3 463 82.3
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.2e-215 752.3 463 82.1
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 3.7e-215 751.5 455 82.0
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 3.7e-215 751.5 452 83.8
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 4.9e-215 751.1 463 79.9
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 8.3e-215 750.4 457 81.6
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 8.3e-215 750.4 462 81.2
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 8.3e-215 750.4 462 81.2
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 1.4e-214 749.6 462 81.4
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.9e-214 749.2 451 83.4
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 2.4e-214 748.8 455 81.8
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.4e-214 748.8 455 82.9
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 4.1e-214 748.0 461 82.4
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 4.1e-214 748.0 457 81.4
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 7.1e-214 747.3 464 79.3
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 1.2e-213 746.5 459 81.9
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 1.2e-213 746.5 459 81.9
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 3.5e-213 745.0 459 81.3
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 3.5e-213 745.0 459 81.3
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 6.0e-213 744.2 459 81.7
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 6.0e-213 744.2 459 81.7
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.3e-212 743.0 427 84.8
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 6.6e-212 740.7 452 82.1
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 8.6e-212 740.3 421 86.2
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 8.6e-212 740.3 452 80.5
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.1e-211 740.0 442 82.6
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 4.3e-211 738.0 463 78.4
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 9.5e-211 736.9 427 85.2
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 1.6e-210 736.1 429 86.2
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 1.6e-210 736.1 429 86.2
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 8.1e-210 733.8 413 86.9
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 3.1e-209 731.9 464 79.5
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 6.8e-209 730.7 427 84.3
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 1.5e-208 729.6 442 83.0
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 5.8e-208 727.6 457 79.6
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 9.9e-208 726.9 410 86.8
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 2.9e-207 725.3 440 82.0
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 1.1e-206 723.4 466 78.5
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 3.2e-206 721.8 432 83.1
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 7.1e-206 720.7 461 81.3
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 6.6e-204 714.1 467 76.4
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 3.3e-203 711.8 456 78.1
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 7.3e-203 710.7 419 82.6
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 2.4e-201 705.7 443 79.5
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 3.5e-197 691.8 391 85.9
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 4.6e-197 691.4 470 75.7
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 5.8e-192 674.5 455 76.0
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 9.9e-192 673.7 384 86.2
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 1.3e-191 673.3 524 68.5
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 3.8e-191 671.8 463 74.7
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 4.2e-190 668.3 384 85.4
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 4.2e-190 668.3 397 83.9
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 1.2e-189 666.8 460 74.8
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 5.1e-188 661.4 452 75.2
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 5.6e-187 657.9 413 78.2
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 9.0e-185 650.6 410 78.0
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 8.4e-183 644.0 444 74.5
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 1.8e-180 636.3 414 76.6
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.9e-179 632.9 427 73.5
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 1.6e-178 629.8 457 72.2
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 2.6e-176 622.5 428 72.0
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 2.9e-175 619.0 413 74.6
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 2.1e-173 612.8 409 72.9
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 4.1e-169 598.6 410 72.0
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.4e-166 590.1 481 66.5
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 1.3e-162 577.0 425 70.8
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 6.9e-153 544.7 330 83.0
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 2.6e-152 542.7 551 55.9
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.2e-144 517.3 429 59.4
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.8e-140 503.4 330 77.0
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 7.5e-131 471.5 429 56.4
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 1.5e-123 447.2 401 58.4
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 5.4e-121 438.7 369 60.4
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 4.7e-117 425.6 252 82.5
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.9e-110 403.7 275 73.5
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 1.4e-108 397.5 411 50.6
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 2.4e-105 386.7 421 51.1
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 9.3e-81 305.1 173 87.3
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 1.0e-79 301.6 310 53.2
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.1e-78 298.1 189 81.5
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 4.8e-77 292.7 387 43.2
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.1e-60 238.4 361 40.7
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 2.2e-58 230.7 136 77.2
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.5e-46 190.7 384 35.4
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.3e-45 188.3 117 82.1
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 2.7e-32 144.1 143 55.2
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 6.3e-29 132.9 72 86.1
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 9.1e-28 129.0 81 85.2
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 2.0e-27 127.9 69 87.0
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 7.5e-22 109.4 105 60.0
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 6.3e-21 106.3 76 71.1
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 2.4e-20 104.4 67 83.6
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 1.6e-16 91.7 61 73.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.3e-15 87.8 296 27.0
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 4.4e-14 83.6 59 74.6
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 2.9e-10 70.9 50 66.0
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 1.1e-09 68.9 74 51.4
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 8.0e-08 62.8 46 65.2
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 8.0e-08 62.8 46 65.2
AUR62002710 Chenopodium quinoa HOM05D004870 ORTHO05D138226 8.9e-07 59.3 29 96.6
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.7e-06 56.6 156 30.1
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 7.5e-06 56.2 156 29.5
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 9.8e-06 55.8 157 28.0
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 9.8e-06 55.8 205 27.3


User provided reference genes

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