Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 8.3e-171 603.6 300 100.0
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 1.2e-150 536.6 300 90.3
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 1.1e-149 533.5 298 88.6
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 4.0e-149 531.6 298 89.3
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 5.2e-149 531.2 298 88.6
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 4.4e-148 528.1 298 88.9
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 2.9e-147 525.4 299 87.3
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 4.6e-145 518.1 297 84.5
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 7.3e-143 510.8 296 83.1
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 4.4e-140 501.5 298 83.6
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 5.6e-135 484.6 296 78.4
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 5.6e-135 484.6 297 77.8
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 5.6e-135 484.6 296 78.4
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 1.6e-134 483.0 297 77.4
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 2.1e-134 482.6 297 76.1
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 6.2e-134 481.1 297 77.8
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 8.1e-134 480.7 293 77.1
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.1e-133 480.3 298 75.5
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.1e-133 480.3 298 75.5
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 1.1e-133 480.3 297 76.1
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.4e-133 479.9 298 75.5
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 1.8e-133 479.6 296 77.0
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.4e-133 479.2 298 75.5
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 3.1e-133 478.8 298 75.2
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 4.0e-133 478.4 297 77.4
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 6.9e-133 477.6 317 71.9
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 1.2e-132 476.9 297 76.4
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 2.0e-132 476.1 293 77.5
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 2.6e-132 475.7 296 76.0
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 3.4e-132 475.3 296 77.0
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 4.4e-132 474.9 294 77.9
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 5.8e-132 474.6 297 77.1
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 1.3e-131 473.4 297 76.1
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 2.2e-131 472.6 296 75.7
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 8.4e-131 470.7 297 75.4
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 1.1e-130 470.3 294 76.5
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 1.9e-130 469.5 296 75.3
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 3.2e-130 468.8 297 76.8
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 4.2e-130 468.4 297 76.1
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 4.2e-130 468.4 294 76.2
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 5.4e-130 468.0 297 75.8
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 7.1e-130 467.6 295 75.3
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 7.1e-130 467.6 297 75.8
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 9.3e-130 467.2 297 76.1
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 1.2e-129 466.8 297 74.7
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 2.1e-129 466.1 297 75.4
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 2.1e-129 466.1 297 75.4
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 3.5e-129 465.3 297 75.8
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 6.0e-129 464.5 295 74.9
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 7.9e-129 464.2 297 74.4
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 1.0e-128 463.8 311 73.3
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 1.3e-128 463.4 297 75.1
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 3.0e-128 462.2 293 75.8
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 8.7e-128 460.7 297 74.1
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 8.7e-128 460.7 294 74.1
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 7.3e-127 457.6 297 74.7
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 7.3e-127 457.6 298 75.2
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 3.6e-126 455.3 293 74.4
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 3.6e-126 455.3 297 74.4
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 3.6e-126 455.3 297 73.4
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 1.8e-125 453.0 295 74.9
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 2.4e-125 452.6 318 69.8
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 4.0e-125 451.8 281 77.9
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 4.0e-125 451.8 297 74.1
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 5.3e-125 451.4 309 71.2
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 5.3e-125 451.4 297 71.4
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 5.8e-124 448.0 297 72.4
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 2.9e-123 445.7 345 64.9
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 7.9e-121 437.6 298 69.8
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 3.0e-120 435.6 298 70.1
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 1.5e-119 433.3 264 79.9
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 1.9e-119 433.0 297 70.0
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 1.9e-119 433.0 296 68.2
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 3.3e-119 432.2 298 69.1
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 4.3e-119 431.8 295 70.5
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 4.3e-119 431.8 295 70.5
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 1.3e-118 430.3 295 70.2
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 1.6e-118 429.9 298 68.5
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 1.6e-118 429.9 296 71.3
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 1.6e-118 429.9 332 66.3
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 1.6e-118 429.9 297 69.0
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 2.1e-118 429.5 290 72.4
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 2.8e-118 429.1 295 69.8
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 2.8e-118 429.1 295 69.8
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 3.1e-117 425.6 298 69.1
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 1.3e-115 420.2 299 67.9
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 4.2e-114 415.2 320 64.4
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 1.0e-112 410.6 298 67.1
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 3.9e-112 408.7 298 65.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.3e-111 405.6 296 68.2
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 4.3e-111 405.2 265 72.5
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 3.7e-110 402.1 297 67.3
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 3.0e-104 382.5 297 63.0
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 2.5e-98 362.8 198 91.9
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 6.9e-93 344.7 219 75.8
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 1.3e-91 340.5 298 56.7
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 1.8e-88 330.1 293 57.3
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 3.3e-87 325.9 302 53.0
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 4.8e-86 322.0 287 55.7
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 5.9e-84 315.1 197 77.2
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 3.2e-82 309.3 199 73.4
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 3.0e-72 276.2 188 69.7
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 8.5e-67 258.1 261 50.6
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 4.9e-62 242.3 164 72.6
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 2.8e-57 226.5 147 70.7
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 1.6e-52 210.7 146 68.5
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 1.9e-50 203.8 147 68.0
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 2.0e-47 193.7 142 68.3
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 3.7e-38 162.9 106 73.6
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 1.6e-36 157.5 97 76.3
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 4.4e-31 139.4 73 90.4
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.7e-28 130.2 77 79.2
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 3.5e-28 129.8 73 82.2
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 3.1e-24 116.7 336 27.1
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 5.8e-23 112.5 326 28.2
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.2e-22 110.5 66 77.3
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 1.9e-21 107.5 116 51.7
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 1.9e-21 107.5 290 26.9
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 1.8e-08 64.3 41 75.6


User provided reference genes

Program Settings