Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 8.5e-179 630.2 307 100.0
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 2.3e-99 366.3 269 74.3
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 6.9e-96 354.8 269 71.4
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 5.5e-85 318.5 270 66.3
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.5e-79 300.4 271 62.0
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 7.6e-79 298.1 271 62.7
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 2.1e-76 290.0 271 59.8
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 1.5e-71 273.9 268 56.7
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 1.7e-70 270.4 268 56.0
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 3.8e-70 269.2 254 60.6
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 1.1e-69 267.7 268 56.0
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 2.4e-64 250.0 247 53.4
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 1.2e-63 247.7 268 52.6
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 3.4e-63 246.1 269 52.4
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 3.4e-63 246.1 269 51.7
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 5.9e-63 245.4 269 51.7
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 2.9e-62 243.0 268 50.4
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 3.8e-62 242.7 268 51.5
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 3.8e-62 242.7 268 50.4
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 4.2e-61 239.2 255 52.5
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 5.5e-61 238.8 269 50.9
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 9.4e-61 238.0 268 52.2
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 3.6e-60 236.1 269 49.4
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 1.0e-59 234.6 268 49.6
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.4e-59 234.2 269 50.2
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 1.8e-59 233.8 268 51.1
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 2.3e-59 233.4 265 50.6
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 3.9e-59 232.6 269 50.2
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.5e-58 230.7 269 49.4
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 3.3e-58 229.6 272 48.9
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 7.4e-58 228.4 261 48.3
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 1.3e-57 227.6 268 47.8
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.3e-57 227.6 268 48.5
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 1.7e-57 227.3 268 51.9
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 4.8e-57 225.7 247 50.6
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 4.8e-57 225.7 248 50.8
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 1.1e-56 224.6 269 46.8
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 2.4e-56 223.4 246 50.8
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.2e-55 221.1 273 50.5
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 2.6e-55 219.9 266 48.9
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 7.7e-55 218.4 266 47.0
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 1.0e-54 218.0 266 47.4
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 1.3e-54 217.6 264 47.7
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 2.2e-54 216.9 276 45.3
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.9e-53 213.8 240 48.3
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 2.1e-52 210.3 269 45.4
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 6.1e-52 208.8 268 46.6
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 1.0e-51 208.0 268 46.6
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 3.3e-50 203.0 268 46.3
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 4.4e-50 202.6 274 45.3
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 9.7e-50 201.4 221 48.4
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 1.3e-49 201.1 256 44.5
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 2.8e-49 199.9 225 54.2
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 1.4e-48 197.6 266 44.4
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 4.1e-48 196.1 270 44.8
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 3.2e-45 186.4 268 44.8
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 4.2e-45 186.0 229 45.4
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 1.0e-43 181.4 378 34.9
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 6.7e-43 178.7 189 50.3
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 5.0e-38 162.5 184 48.9
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 6.8e-35 152.1 162 52.5
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 6.3e-33 145.6 132 56.1
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 5.9e-31 139.0 140 53.6
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.8e-30 136.3 125 56.8
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.8e-30 136.3 125 56.8
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 3.2e-29 133.3 137 49.6
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 1.3e-22 111.3 90 58.9
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 8.6e-22 108.6 145 40.0
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 1.1e-21 108.2 86 61.6
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 4.0e-19 99.8 257 33.1
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.1e-16 91.7 108 50.0
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.1e-16 91.7 108 50.0
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 1.1e-16 91.7 160 39.4
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 2.0e-15 87.4 267 32.2
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 1.0e-11 75.1 236 29.7
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 1.8e-11 74.3 254 25.2
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 1.8e-11 74.3 112 40.2
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 3.1e-11 73.6 192 27.6
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 4.0e-11 73.2 192 27.1
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 4.0e-11 73.2 242 26.9
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 5.2e-11 72.8 253 27.3
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 5.2e-11 72.8 221 26.2
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 6.8e-11 72.4 277 28.2
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 6.8e-11 72.4 253 27.3
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 8.9e-11 72.0 247 26.3
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 1.2e-10 71.6 261 26.8
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 2.6e-10 70.5 248 25.4
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 2.6e-10 70.5 111 33.3
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 3.4e-10 70.1 248 25.0
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 3.4e-10 70.1 260 27.7
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 4.4e-10 69.7 244 27.0
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 9.8e-10 68.6 244 29.1
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.7e-09 67.8 229 25.3
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 1.7e-09 67.8 104 38.5
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.7e-09 67.8 104 35.6
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 1.7e-09 67.8 277 26.7
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 2.2e-09 67.4 192 26.0
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 2.9e-09 67.0 229 25.3
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 3.7e-09 66.6 196 25.0
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 3.7e-09 66.6 266 26.7
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 4.9e-09 66.2 186 26.9
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 4.9e-09 66.2 185 24.9
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 4.9e-09 66.2 197 25.9
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 6.4e-09 65.9 185 24.9
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 6.4e-09 65.9 247 25.5
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 8.3e-09 65.5 197 25.9
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 1.1e-08 65.1 112 31.2
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.1e-08 65.1 197 25.9
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 1.1e-08 65.1 197 25.9
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 1.1e-08 65.1 247 26.3
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.4e-08 64.7 247 26.3
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 1.4e-08 64.7 247 26.3
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 1.4e-08 64.7 112 33.9
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 2.4e-08 63.9 247 26.3
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.4e-08 63.9 240 23.3
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 3.2e-08 63.5 222 28.4
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 3.2e-08 63.5 257 24.9
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 3.2e-08 63.5 192 25.0
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 4.1e-08 63.2 190 23.7
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 5.4e-08 62.8 259 23.2
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 7.0e-08 62.4 245 26.1
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 7.0e-08 62.4 235 28.1
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 7.0e-08 62.4 255 27.1
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 7.0e-08 62.4 127 30.7
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 7.0e-08 62.4 104 35.6
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 9.2e-08 62.0 121 33.1
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 1.2e-07 61.6 235 26.0
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.2e-07 61.6 246 25.6
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.2e-07 61.6 279 26.5
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 1.6e-07 61.2 259 23.9
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 1.6e-07 61.2 269 24.9
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 1.6e-07 61.2 145 30.3
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 1.6e-07 61.2 268 26.1
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 1.6e-07 61.2 192 24.5
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 2.7e-07 60.5 259 23.9
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 2.7e-07 60.5 259 23.9
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 3.5e-07 60.1 95 35.8
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 3.5e-07 60.1 228 25.4
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 4.6e-07 59.7 213 25.4
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 4.6e-07 59.7 228 26.8
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 4.6e-07 59.7 285 24.9
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 6.0e-07 59.3 106 30.2
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 7.8e-07 58.9 231 25.5
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 7.8e-07 58.9 250 24.0
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 7.8e-07 58.9 211 24.2
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.0e-06 58.5 227 25.6
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 1.0e-06 58.5 223 22.9
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 1.0e-06 58.5 257 24.9
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 1.3e-06 58.2 249 25.7
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.7e-06 57.8 249 23.7
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.0e-06 57.0 186 25.8
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 3.0e-06 57.0 269 24.9
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 5.0e-06 56.2 247 27.9
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 6.6e-06 55.8 235 25.1
HPP92_025618 Vanilla planifolia HOM05D006160 ORTHO05D007674 6.6e-06 55.8 102 30.4
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 8.6e-06 55.5 215 24.2


User provided reference genes

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