Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 4.8e-192 674.5 378 100.0
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.9e-172 609.4 387 90.7
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 5.5e-172 607.8 387 89.4
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 7.5e-169 597.4 387 88.6
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 3.2e-159 565.5 393 82.2
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 7.0e-159 564.3 393 81.9
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.7e-157 559.7 383 84.6
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 6.8e-154 547.7 403 78.2
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 6.4e-152 541.2 392 80.4
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.4e-151 540.0 394 79.4
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 1.9e-151 539.7 385 81.0
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.6e-150 536.6 393 77.4
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 7.8e-150 534.3 394 77.2
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.7e-149 533.1 394 77.9
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.7e-149 533.1 394 77.2
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.7e-149 533.1 394 77.2
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 5.0e-149 531.6 394 76.6
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 8.6e-149 530.8 394 77.4
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.6e-149 530.8 394 76.6
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.6e-149 530.8 394 76.6
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.1e-148 530.4 394 78.4
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.5e-148 530.0 393 75.8
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.5e-148 530.0 393 77.1
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.5e-148 529.3 393 75.8
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 5.6e-148 528.1 394 76.6
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 2.1e-147 526.2 394 77.4
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.1e-147 526.2 394 75.4
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 8.1e-147 524.2 394 75.4
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 8.1e-147 524.2 394 75.1
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.1e-146 523.9 389 77.1
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.8e-146 523.1 395 78.2
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.8e-146 523.1 394 76.1
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.3e-146 522.7 394 77.2
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 3.1e-146 522.3 394 76.1
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.2e-145 520.4 389 75.1
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 1.2e-145 520.4 394 77.4
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.5e-145 520.0 394 76.6
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.6e-145 519.2 409 74.6
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 5.8e-145 518.1 394 76.1
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 5.8e-145 518.1 394 75.9
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 5.8e-145 518.1 392 75.3
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 9.8e-145 517.3 394 76.1
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 9.8e-145 517.3 394 75.4
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.3e-144 516.9 394 77.2
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.7e-144 516.5 394 75.1
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 4.9e-144 515.0 395 75.9
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 1.4e-143 513.5 394 74.9
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 4.1e-143 511.9 394 74.4
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 1.2e-142 510.4 394 74.4
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 2.7e-142 509.2 394 75.6
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.0e-141 507.3 394 72.8
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 5.1e-141 505.0 397 74.1
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 6.6e-141 504.6 394 75.4
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 8.6e-141 504.2 394 74.4
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.5e-140 503.4 404 73.3
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 5.6e-140 501.5 389 75.1
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 9.5e-140 500.7 391 74.2
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 1.2e-139 500.4 394 71.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.6e-139 500.0 390 71.0
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 3.6e-139 498.8 418 71.3
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.1e-138 497.3 394 69.0
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.2e-137 493.8 394 66.5
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.5e-137 493.4 378 74.9
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 2.0e-137 493.0 394 66.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 4.4e-137 491.9 394 66.8
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 4.4e-137 491.9 394 66.0
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 5.8e-137 491.5 394 67.8
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 5.8e-137 491.5 394 66.5
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 7.6e-137 491.1 388 63.9
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 7.6e-137 491.1 356 80.6
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.3e-136 490.3 438 68.7
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 4.9e-136 488.4 391 67.3
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 6.4e-136 488.0 391 67.0
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 8.4e-136 487.6 394 69.5
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 1.4e-135 486.9 387 73.4
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.9e-135 486.5 396 65.2
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 9.2e-135 484.2 391 66.5
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 9.2e-135 484.2 391 66.5
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 9.2e-135 484.2 395 71.9
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.6e-134 483.4 395 70.6
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 4.6e-134 481.9 370 77.0
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 6.0e-134 481.5 396 66.2
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 5.1e-133 478.4 394 67.5
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 5.1e-133 478.4 370 76.5
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.9e-132 476.5 394 64.5
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 2.6e-129 466.1 392 70.7
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.9e-127 459.9 379 66.0
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.2e-126 457.2 394 69.5
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.3e-125 453.8 393 67.4
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 3.0e-125 452.6 394 67.8
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 9.0e-122 441.0 426 64.6
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.9e-120 436.0 378 60.8
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 8.4e-120 434.5 397 60.2
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 6.0e-118 428.3 387 67.7
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 3.9e-117 425.6 337 77.4
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.3e-116 422.2 358 65.9
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.1e-114 417.5 394 67.0
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 3.4e-105 386.0 369 58.3
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 3.1e-98 362.8 381 52.2
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 5.9e-97 358.6 394 51.0
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 3.2e-95 352.8 393 51.7
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 4.1e-90 335.9 291 69.8
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 5.0e-88 328.9 394 48.5
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 4.4e-84 315.8 385 53.0
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 6.1e-78 295.4 293 57.3
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.8e-77 293.9 328 62.2
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.3e-75 287.7 240 62.1
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.4e-74 284.3 362 47.8
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 1.3e-67 261.2 381 52.8
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 1.1e-63 248.1 296 51.0
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 6.1e-54 215.7 182 62.1
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 5.2e-53 212.6 182 61.5
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 7.5e-52 208.8 153 75.2
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 6.3e-51 205.7 165 64.8
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 4.1e-50 203.0 539 30.2
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 5.4e-50 202.6 282 46.1
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.7e-48 197.6 405 32.3
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 4.1e-42 176.4 411 34.1
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.0e-40 171.8 386 32.4
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 5.6e-39 166.0 122 71.3
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 2.8e-38 163.7 120 70.8
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.4e-34 151.4 206 47.6
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 6.6e-32 142.5 92 76.1
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 2.1e-30 137.5 71 83.1
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-29 134.4 160 46.9
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 4.0e-29 133.3 125 64.0
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 6.4e-27 125.9 88 75.0
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 4.6e-25 119.8 105 58.1
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.3e-24 118.2 88 68.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 5.1e-24 116.3 71 80.3
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 1.2e-22 111.7 130 63.8
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 1.6e-22 111.3 113 52.2
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.6e-22 111.3 148 44.6
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 9.9e-20 102.1 89 58.4
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 4.9e-19 99.8 50 84.0
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 7.8e-17 92.4 145 39.3
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 7.3e-15 85.9 80 61.2
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.8e-14 84.0 48 66.7
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.5e-12 78.2 51 76.5
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 4.4e-12 76.6 64 60.9
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 5.8e-12 76.3 46 80.4
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 6.4e-11 72.8 44 81.8
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 9.3e-10 68.9 88 44.3
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 2.3e-08 64.3 38 81.6
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 2.5e-07 60.8 35 82.9


User provided reference genes

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