Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.9e-175 619.0 301 100.0
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 6.6e-160 567.4 298 90.9
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 9.5e-159 563.5 298 89.6
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 5.6e-151 537.7 302 85.4
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 3.1e-149 531.9 304 84.9
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 3.1e-149 531.9 302 83.4
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 4.4e-148 528.1 298 84.9
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 2.2e-147 525.8 303 83.8
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 5.8e-140 501.1 290 83.4
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 8.4e-139 497.3 305 79.0
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 2.1e-134 482.6 296 77.4
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 4.0e-133 478.4 302 77.5
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.2e-132 476.9 296 76.0
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 8.4e-131 470.7 301 75.4
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 3.2e-130 468.8 299 74.2
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 1.0e-128 463.8 300 74.3
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.9e-127 459.5 298 73.8
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 2.5e-127 459.1 302 73.2
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 3.3e-127 458.8 304 72.7
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.1e-126 456.1 291 74.2
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 6.2e-126 454.5 302 72.2
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.4e-125 452.6 298 72.5
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 3.1e-125 452.2 299 73.6
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 4.0e-125 451.8 306 70.9
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 5.8e-124 448.0 294 71.1
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 2.9e-123 445.7 296 70.9
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 3.8e-123 445.3 300 70.0
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 8.4e-123 444.1 300 70.3
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 2.5e-122 442.6 296 70.9
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 3.2e-122 442.2 300 69.0
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 3.2e-122 442.2 308 69.8
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 4.2e-122 441.8 299 69.9
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 5.5e-122 441.4 296 70.6
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 9.3e-122 440.7 296 70.3
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 1.2e-121 440.3 298 70.8
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 2.7e-121 439.1 307 69.1
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.5e-121 438.7 300 68.7
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 4.6e-121 438.3 304 68.1
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 7.9e-121 437.6 295 70.5
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 7.9e-121 437.6 300 68.3
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.8e-120 436.4 300 68.3
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 2.3e-120 436.0 290 71.4
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 5.1e-120 434.9 304 68.8
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.1e-119 433.7 294 71.1
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 1.9e-119 433.0 298 69.8
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 9.7e-119 430.6 305 68.2
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.7e-119 430.6 300 67.3
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 3.7e-118 428.7 312 69.2
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.1e-117 427.2 307 67.8
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 2.4e-117 426.0 297 66.7
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 1.2e-116 423.7 321 67.0
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 3.4e-116 422.2 295 67.5
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 4.5e-116 421.8 306 66.0
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.3e-115 420.2 309 66.7
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 5.0e-115 418.3 302 67.2
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 6.5e-115 417.9 289 66.4
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 1.1e-114 417.2 301 65.4
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 1.1e-114 417.2 307 65.1
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 9.3e-114 414.1 297 69.0
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 6.7e-112 407.9 301 65.4
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 6.7e-112 407.9 291 67.4
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 1.9e-111 406.4 258 75.2
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 7.4e-111 404.4 302 65.6
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 1.7e-110 403.3 298 63.8
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.8e-109 399.8 309 63.8
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 1.8e-109 399.8 301 62.1
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 2.4e-109 399.4 302 65.2
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 1.5e-108 396.7 306 65.0
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.7e-107 393.3 304 63.5
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 1.7e-107 393.3 302 63.9
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.1e-106 390.6 296 66.6
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 1.4e-106 390.2 296 62.2
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 7.2e-106 387.9 290 62.4
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 9.4e-106 387.5 301 61.1
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 1.2e-105 387.1 293 62.1
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 2.7e-105 386.0 300 61.3
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 4.7e-105 385.2 299 60.9
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 3.9e-104 382.1 295 62.0
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 6.7e-104 381.3 310 61.6
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 6.7e-104 381.3 307 60.9
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 2.4e-101 372.9 291 61.9
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 5.9e-100 368.2 288 59.7
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.1e-95 354.0 305 61.0
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 2.2e-94 349.7 307 59.0
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 1.6e-92 343.6 296 55.1
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 1.0e-91 340.9 229 68.6
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 1.9e-90 336.7 234 70.9
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 3.2e-90 335.9 232 71.6
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 9.4e-90 334.3 294 58.5
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 3.6e-89 332.4 242 64.5
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 1.4e-85 320.5 267 60.7
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 1.7e-78 297.0 230 66.5
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 2.8e-78 296.2 417 38.8
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.1e-77 294.3 298 51.0
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.1e-77 292.7 198 70.7
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.7e-76 289.7 293 51.9
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 4.4e-71 272.3 202 63.9
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 2.0e-68 263.5 207 61.8
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 8.6e-67 258.1 191 61.8
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 7.3e-66 255.0 289 49.1
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 8.3e-62 241.5 168 72.0
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 1.7e-59 233.8 165 61.8
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 5.0e-59 232.3 190 63.7
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 2.1e-57 226.9 127 76.4
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 4.0e-56 222.6 158 68.4
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 4.0e-56 222.6 162 68.5
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 8.9e-56 221.5 252 49.2
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 5.4e-53 212.2 146 66.4
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 5.4e-53 212.2 146 66.4
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 9.2e-53 211.5 133 69.9
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 1.6e-52 210.7 139 68.3
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.8e-48 197.2 123 82.9
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.5e-47 194.1 103 84.5
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.3e-46 191.0 167 56.9
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 5.1e-43 179.1 128 65.6
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.6e-41 174.1 131 60.3
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.6e-39 165.2 149 59.1
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 2.5e-34 150.2 97 76.3
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 1.4e-24 117.9 140 46.4
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.2e-22 110.5 100 53.0
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.2e-22 110.5 100 53.0
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.8e-22 109.8 101 53.5
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.9e-22 109.4 100 52.0
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 4.6e-20 102.8 85 60.0
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 3.0e-19 100.1 169 37.3
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.1e-16 91.7 84 48.8
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 2.4e-16 90.5 73 58.9
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.3e-10 69.7 56 62.5
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 3.7e-09 66.6 65 50.8
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 1.8e-08 64.3 65 49.2
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.8e-08 64.3 52 53.8
FAN19G2556 Fragaria x ananassa HOM05D010020 ORTHO05D015123 3.4e-07 60.1 134 38.1
FvH4_1g21970 Fragaria vesca HOM05D010020 ORTHO05D015123 1.0e-06 58.5 124 39.5


User provided reference genes

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