Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 2051.6 965 100.0
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1930.6 976 93.6
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1827.0 965 89.3
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1798.1 964 87.7
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1762.7 968 85.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1751.9 961 84.5
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1737.2 967 84.4
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1724.1 964 83.1
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1723.0 972 83.5
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1719.1 979 82.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1719.1 973 83.0
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1718.4 965 83.1
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1710.7 974 82.6
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1704.5 964 82.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1699.1 957 82.1
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1691.4 957 82.5
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1679.1 969 81.4
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1678.7 964 81.2
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1669.4 971 80.8
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1667.1 966 81.1
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1659.8 963 80.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1652.5 964 80.5
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1638.6 964 79.4
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1627.1 965 79.0
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1620.1 965 78.7
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1619.0 961 78.9
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1618.6 974 78.0
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1617.8 964 77.8
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 964 78.3
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 964 78.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1612.0 953 78.5
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1608.2 965 77.9
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1605.9 974 77.7
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1605.9 964 77.9
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1605.9 954 78.4
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1598.6 965 76.7
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1597.8 971 76.8
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1597.8 964 77.2
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1591.6 964 76.8
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1590.9 965 76.7
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1590.5 961 76.9
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 965 76.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1586.6 979 76.5
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1583.5 976 76.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1580.1 965 76.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 975 76.6
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 965 75.4
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1574.3 975 76.7
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1572.0 969 74.5
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1571.6 969 75.1
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1568.9 965 75.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1566.6 968 75.9
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1565.1 966 76.1
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1564.3 971 75.1
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1555.8 964 74.3
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1555.0 964 75.7
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 965 75.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 962 76.3
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1552.7 971 74.7
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1552.0 962 74.4
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1549.6 963 75.1
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1548.1 962 74.0
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1546.2 966 74.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1543.9 972 74.2
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1540.0 969 74.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1538.9 975 73.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 970 73.9
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 965 73.4
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1535.8 959 74.6
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 959 74.7
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1530.8 963 73.7
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1528.5 964 73.5
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 967 72.8
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1522.3 970 73.5
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 964 74.1
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 965 73.7
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1518.8 971 73.4
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1517.3 967 73.6
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1514.6 965 73.8
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 920 77.4
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1513.0 963 72.5
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1513.0 969 73.6
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1512.3 964 72.4
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1499.6 964 72.2
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 976 70.9
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1484.5 963 71.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1484.2 964 72.6
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1483.8 960 72.6
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 962 72.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1479.5 961 72.5
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1479.5 937 74.4
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1468.0 958 71.5
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 953 72.5
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1465.3 767 87.5
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1455.7 970 71.8
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1445.6 962 71.3
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1441.0 958 69.6
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 965 71.1
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1431.8 963 70.7
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1431.8 887 75.1
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1429.5 967 70.9
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1429.1 991 69.5
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1425.6 871 75.7
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1422.9 961 70.4
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1421.0 980 68.9
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1417.1 961 70.0
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1416.7 965 70.7
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1416.7 965 70.7
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1414.1 960 70.2
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1412.5 962 70.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1408.7 962 70.2
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1406.7 965 70.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 964 70.0
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 777 84.7
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1397.9 844 77.3
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1396.7 964 69.8
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1396.3 846 76.6
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1391.7 964 69.6
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1380.5 997 65.8
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1335.9 977 64.8
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1326.2 964 67.2
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1305.0 965 67.2
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1291.9 966 66.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1238.0 845 70.2
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1231.1 763 75.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1224.2 780 73.8
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1173.7 781 70.2
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 4.6e-311 1071.2 969 54.5
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 5.0e-302 1041.2 953 54.1
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.7e-298 1027.7 681 71.4
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 5.4e-288 994.6 711 67.8
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.3e-281 973.4 967 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.1e-275 952.2 953 50.2
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 7.0e-272 941.0 963 50.8
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.1e-247 859.8 559 72.1
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.0e-242 843.2 878 50.0
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.3e-201 707.6 402 77.9
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 7.1e-131 472.6 278 79.1
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 4.5e-117 426.8 343 62.7
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.7e-116 424.9 407 54.5
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 9.3e-107 392.5 371 54.4
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 4.3e-104 383.6 211 83.4
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 7.9e-90 336.3 192 79.7
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.7e-87 328.6 202 73.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 8.2e-87 326.2 275 60.4
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.8e-76 290.8 159 81.8
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-67 262.7 143 82.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.5e-67 262.3 209 58.9
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.2e-64 252.7 156 75.0
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 4.5e-61 240.7 642 29.8
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.9e-55 221.5 368 40.5
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 5.4e-46 190.7 96 86.5
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 8.9e-41 173.3 808 23.4
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.9e-39 168.3 148 54.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-37 162.9 144 56.9
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.5e-35 153.3 86 83.7
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 9.5e-35 153.3 149 54.4
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.3e-31 142.9 160 47.5
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 2.9e-31 141.7 92 72.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.7e-28 132.5 98 58.2
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-27 129.0 88 67.0
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 4.3e-27 127.9 184 42.4
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-25 120.9 185 38.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.5e-19 102.8 127 43.3
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.1e-18 99.0 488 25.2
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-16 92.8 116 44.8
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 2.9e-15 88.6 114 45.6
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.5e-11 75.5 46 67.4
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 4.3e-11 74.7 71 54.9
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.8e-09 69.3 42 71.4
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.0e-09 68.2 76 46.1
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.0e-08 65.9 49 61.2
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 5.8e-08 64.3 78 46.2


User provided reference genes

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