Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G234751 Glycine max HOM05D001965 ORTHO05D002112 4.4e-44 181.0 100 100.0
Glyma.03G237000 Glycine max HOM05D001965 ORTHO05D002112 1.7e-19 99.4 116 57.8
Nn4g25956 Nelumbo nucifera HOM05D001965 ORTHO05D002112 2.8e-14 82.0 83 55.4
arahy.Tifrunner.gnm1.ann1.FE8GQY Arachis hypogaea HOM05D001965 ORTHO05D002112 3.7e-14 81.6 116 46.6
Medtr1g083040 Medicago truncatula HOM05D001965 ORTHO05D002112 4.0e-13 78.2 116 44.0
arahy.Tifrunner.gnm1.ann1.01A8MA Arachis hypogaea HOM05D001965 ORTHO05D002112 1.2e-12 76.6 116 44.0
Lalb_Chr15g0077241 Lupinus albus HOM05D001965 ORTHO05D002112 1.5e-12 76.3 116 46.6
Lsat_1_v5_gn_6_15141 Lactuca sativa HOM05D001965 ORTHO05D002112 3.4e-12 75.1 81 53.1
Lalb_Chr06g0167641 Lupinus albus HOM05D001965 ORTHO05D002112 1.0e-11 73.6 119 42.9
VMungo0720G2192 Vigna mungo HOM05D001965 ORTHO05D002112 2.2e-11 72.4 116 43.1
Atru.chr2.365 Acer truncatum HOM05D001965 ORTHO05D002112 3.8e-11 71.6 115 42.6
Dinv40302 Davidia involucrata HOM05D001965 ORTHO05D002112 6.5e-11 70.9 116 42.2
Glyma.10G153800 Glycine max HOM05D001965 ORTHO05D002112 6.5e-11 70.9 115 43.5
TPR.G6092 Trifolium pratense HOM05D001965 ORTHO05D002112 6.5e-11 70.9 116 43.1
Dinv30775 Davidia involucrata HOM05D001965 ORTHO05D002112 1.4e-10 69.7 116 42.2
Lj1g0025505 Lotus japonicus HOM05D001965 ORTHO05D002112 1.4e-10 69.7 116 43.1
Aqoxy2G03054 Aquilegia oxysepala HOM05D001965 ORTHO05D002112 1.9e-10 69.3 120 40.8
Psat0s2745g0040 Pisum sativum HOM05D001965 ORTHO05D002112 2.5e-10 68.9 116 40.5
Phvul.007G179500 Phaseolus vulgaris HOM05D001965 ORTHO05D002112 3.2e-10 68.6 116 41.4
GSVIVG01017770001 Vitis vinifera HOM05D001965 ORTHO05D002112 3.2e-10 68.6 116 43.1
Ca_10116_v3 Cicer arietinum L. HOM05D001965 ORTHO05D002112 4.2e-10 68.2 116 40.5
CiPaw.07G018900 Carya illinoinensis HOM05D001965 ORTHO05D002112 5.5e-10 67.8 116 39.7
Glyma.20G234500 Glycine max HOM05D001965 ORTHO05D002112 5.5e-10 67.8 116 39.7
Lj5g0019884 Lotus japonicus HOM05D001965 ORTHO05D002112 7.1e-10 67.4 116 39.7
ClCG02G015590 Citrullus lanatus HOM05D001965 ORTHO05D002112 9.3e-10 67.0 83 48.2
Thecc.05G310000 Theobroma cacao HOM05D001965 ORTHO05D002112 9.3e-10 67.0 115 40.9
Eucgr.C02776 Eucalyptus grandis HOM05D001965 ORTHO05D002112 1.2e-09 66.6 117 40.2
TWI53G1978 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 1.2e-09 66.6 116 40.5
MSTRG.3934 Avicennia marina HOM05D001965 ORTHO05D002112 2.1e-09 65.9 119 39.5
Ciclev10000065m.g Citrus clementina HOM05D001965 ORTHO05D002112 2.1e-09 65.9 115 40.9
Cpa.g.sc48.70 Carica papaya HOM05D001965 ORTHO05D002112 3.5e-09 65.1 116 42.2
Nn3g21366 Nelumbo nucifera HOM05D001965 ORTHO05D002112 3.5e-09 65.1 116 41.4
QL03p007389 Quercus lobata HOM05D001965 ORTHO05D002112 3.5e-09 65.1 116 40.5
QL03p007709 Quercus lobata HOM05D001965 ORTHO05D002112 3.5e-09 65.1 116 40.5
Hund20572 Selenicereus undatus HOM05D001965 ORTHO05D002112 3.5e-09 65.1 116 40.5
Sopen12g032990 Solanum pennellii HOM05D001965 ORTHO05D002112 3.5e-09 65.1 115 39.1
CSS0007405 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 4.6e-09 64.7 113 41.6
CSS0031262 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 4.6e-09 64.7 113 41.6
MBI19_g04331_MAGBIO Magnolia biondii HOM05D001965 ORTHO05D002112 4.6e-09 64.7 116 41.4
Lju1819A2T53 Lonicera japonica HOM05D001965 ORTHO05D002112 6.0e-09 64.3 120 37.5
Potri.013G020500 Populus trichocarpa HOM05D001965 ORTHO05D002112 6.0e-09 64.3 119 40.3
Prupe.6G323800 Prunus persica HOM05D001965 ORTHO05D002112 6.0e-09 64.3 115 39.1
Solyc12g098160.2 Solanum lycopersicum HOM05D001965 ORTHO05D002112 6.0e-09 64.3 115 39.1
Gohir.D11G311600 Gossypium hirsutum HOM05D001965 ORTHO05D002112 7.9e-09 63.9 115 39.1
Gorai.007G342200 Gossypium raimondii HOM05D001965 ORTHO05D002112 7.9e-09 63.9 115 39.1
AUR62040383 Chenopodium quinoa HOM05D001965 ORTHO05D002112 1.0e-08 63.5 116 39.7
AUR62043447 Chenopodium quinoa HOM05D001965 ORTHO05D002112 1.0e-08 63.5 116 39.7
FvH4_6g06170 Fragaria vesca HOM05D001965 ORTHO05D002112 1.0e-08 63.5 114 40.4
FAN14G1216 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.0e-08 63.5 114 40.4
RcHm_v2.0_Chr3g0455181 Rosa chinensis HOM05D001965 ORTHO05D002112 1.0e-08 63.5 114 40.4
EL10Ac4g09373 Beta vulgaris HOM05D001965 ORTHO05D002112 1.3e-08 63.2 115 39.1
FAN09G1699 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.3e-08 63.2 110 40.9
Rhsim07G0186200 Rhododendron simsii HOM05D001965 ORTHO05D002112 1.3e-08 63.2 116 39.7
TWI56G1184 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 1.3e-08 63.2 112 39.3
Actinidia00042 Actinidia chinensis HOM05D001965 ORTHO05D002112 2.3e-08 62.4 113 40.7
Ah.04g153900 Amaranthus hybridus HOM05D001965 ORTHO05D002112 2.3e-08 62.4 116 37.1
Gohir.A11G295300 Gossypium hirsutum HOM05D001965 ORTHO05D002112 2.3e-08 62.4 115 39.1
TAR633G0752 Trochodendron aralioides HOM05D001965 ORTHO05D002112 2.3e-08 62.4 116 39.7
PGR031G3250 Punica granatum HOM05D001965 ORTHO05D002112 3.0e-08 62.0 117 41.0
Rhsim04G0219400 Rhododendron simsii HOM05D001965 ORTHO05D002112 3.0e-08 62.0 113 40.7
CANSAT54G2574 Cannabis sativa HOM05D001965 ORTHO05D002112 3.9e-08 61.6 134 36.6
CAN.G706.19 Capsicum annuum HOM05D001965 ORTHO05D002112 3.9e-08 61.6 115 38.3
Duzib177G0446 Durio zibethinus HOM05D001965 ORTHO05D002112 3.9e-08 61.6 115 37.4
MD04G1203700 Malus domestica HOM05D001965 ORTHO05D002112 3.9e-08 61.6 116 37.9
TWI12G0026 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 5.1e-08 61.2 111 39.6
GSVIVG01000089001 Vitis vinifera HOM05D001965 ORTHO05D002112 6.7e-08 60.8 116 40.5
EL10Ac3g06584 Beta vulgaris HOM05D001965 ORTHO05D002112 8.7e-08 60.5 116 38.8
AUR62000808 Chenopodium quinoa HOM05D001965 ORTHO05D002112 8.7e-08 60.5 112 37.5
Dinv38307 Davidia involucrata HOM05D001965 ORTHO05D002112 8.7e-08 60.5 113 42.5
Glyma.17G024600 Glycine max HOM05D001965 ORTHO05D002112 1.1e-07 60.1 118 37.3
Hma1.2p1_0698F.1_g205350 Hydrangea macrophylla HOM05D001965 ORTHO05D002112 1.1e-07 60.1 113 40.7
CSS0013812 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 1.5e-07 59.7 116 38.8
Duzib106G0035 Durio zibethinus HOM05D001965 ORTHO05D002112 1.5e-07 59.7 113 38.9
MBI13_g04191_MAGBIO Magnolia biondii HOM05D001965 ORTHO05D002112 1.5e-07 59.7 116 37.1
Peaxi162Scf00386g00415 Petunia axillaris HOM05D001965 ORTHO05D002112 1.5e-07 59.7 115 37.4
SalBow2G2421 Salvia bowleyana HOM05D001965 ORTHO05D002112 1.5e-07 59.7 119 37.8
CiPaw.01G150700 Carya illinoinensis HOM05D001965 ORTHO05D002112 1.9e-07 59.3 125 37.6
CsaV3_3G014420 Cucumis sativus L. HOM05D001965 ORTHO05D002112 1.9e-07 59.3 116 38.8
Potri.005G029000 Populus trichocarpa HOM05D001965 ORTHO05D002112 1.9e-07 59.3 116 38.8
THA.LOC104821767 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 1.9e-07 59.3 116 37.9
CDE07G1274 Ceratophyllum demersum HOM05D001965 ORTHO05D002112 2.5e-07 58.9 119 36.1
Migut.G00183 Erythranthe guttata HOM05D001965 ORTHO05D002112 2.5e-07 58.9 114 37.7
FAN02G4081 Fragaria x ananassa HOM05D001965 ORTHO05D002112 2.5e-07 58.9 105 40.0
Duzib052G0562 Durio zibethinus HOM05D001965 ORTHO05D002112 3.3e-07 58.5 115 37.4
Manes.09G168000 Manihot esculenta HOM05D001965 ORTHO05D002112 3.3e-07 58.5 116 39.7
Oeu002611.1 Olea europaea HOM05D001965 ORTHO05D002112 3.3e-07 58.5 119 36.1
QL06p008270 Quercus lobata HOM05D001965 ORTHO05D002112 3.3e-07 58.5 121 36.4
ClCG05G005970 Citrullus lanatus HOM05D001965 ORTHO05D002112 4.3e-07 58.2 116 37.9
COL.COLO4_13902 Corchorus olitorius HOM05D001965 ORTHO05D002112 4.3e-07 58.2 114 38.6
Nitab4.5_0000784g0110 Nicotiana tabacum HOM05D001965 ORTHO05D002112 4.3e-07 58.2 111 37.8
Nitab4.5_0003147g0060 Nicotiana tabacum HOM05D001965 ORTHO05D002112 4.3e-07 58.2 111 37.8
Sed0023895 Sechium edule HOM05D001965 ORTHO05D002112 4.3e-07 58.2 116 38.8
VMungo1215G2815 Vigna mungo HOM05D001965 ORTHO05D002112 4.3e-07 58.2 125 35.2
FAN05G4497 Fragaria x ananassa HOM05D001965 ORTHO05D002112 5.7e-07 57.8 107 38.3
Potri.008G216600 Populus trichocarpa HOM05D001965 ORTHO05D002112 5.7e-07 57.8 115 38.3
Sed0011069 Sechium edule HOM05D001965 ORTHO05D002112 5.7e-07 57.8 116 40.5
Actinidia23652 Actinidia chinensis HOM05D001965 ORTHO05D002112 7.4e-07 57.4 116 37.1
AagrBONN_evm.TU.Sc2ySwM_228.185 Anthoceros agrestis HOM05D001965 ORTHO05D002112 7.4e-07 57.4 53 52.8
Gohir.A02G047900 Gossypium hirsutum HOM05D001965 ORTHO05D002112 7.4e-07 57.4 117 35.0
PSO210G6282 Papaver somniferum HOM05D001965 ORTHO05D002112 7.4e-07 57.4 111 38.7
THA.LOC104818705 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 7.4e-07 57.4 117 38.5
THA.LOC104821714 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 7.4e-07 57.4 117 41.0
Actinidia05684 Actinidia chinensis HOM05D001965 ORTHO05D002112 9.6e-07 57.0 123 35.8
Aa31LG5G15990 Aethionema arabicum HOM05D001965 ORTHO05D002112 9.6e-07 57.0 121 38.8
Lalb_Chr07g0177631 Lupinus albus HOM05D001965 ORTHO05D002112 9.6e-07 57.0 125 36.8
PSO170G4751 Papaver somniferum HOM05D001965 ORTHO05D002112 9.6e-07 57.0 111 38.7
Peaxi162Scf00205g00120 Petunia axillaris HOM05D001965 ORTHO05D002112 9.6e-07 57.0 115 37.4
Sp3g04240 Schrenkiella parvula HOM05D001965 ORTHO05D002112 9.6e-07 57.0 117 38.5
CDE04G2314 Ceratophyllum demersum HOM05D001965 ORTHO05D002112 1.3e-06 56.6 55 49.1
AUR62005159 Chenopodium quinoa HOM05D001965 ORTHO05D002112 1.3e-06 56.6 112 35.7
Phvul.003G103001 Phaseolus vulgaris HOM05D001965 ORTHO05D002112 1.3e-06 56.6 125 35.2
Thecc.04G280900 Theobroma cacao HOM05D001965 ORTHO05D002112 1.3e-06 56.6 114 36.8
Ah.04g160350 Amaranthus hybridus HOM05D001965 ORTHO05D002112 1.6e-06 56.2 110 37.3
Dinv44401 Davidia involucrata HOM05D001965 ORTHO05D002112 1.6e-06 56.2 49 59.2
Glyma.07G249800 Glycine max HOM05D001965 ORTHO05D002112 1.6e-06 56.2 125 32.0
Gohir.D02G053000 Gossypium hirsutum HOM05D001965 ORTHO05D002112 1.6e-06 56.2 117 34.2
Gorai.005G058900 Gossypium raimondii HOM05D001965 ORTHO05D002112 1.6e-06 56.2 117 35.0
Prupe.1G139300 Prunus persica HOM05D001965 ORTHO05D002112 1.6e-06 56.2 113 38.9
Sc15g0003700 Simmondsia chinensis HOM05D001965 ORTHO05D002112 1.6e-06 56.2 52 53.8
Gohir.D13G111050 Gossypium hirsutum HOM05D001965 ORTHO05D002112 2.1e-06 55.8 122 36.1
Gorai.013G124600 Gossypium raimondii HOM05D001965 ORTHO05D002112 2.1e-06 55.8 122 36.1
Lsat_1_v5_gn_9_86960 Lactuca sativa HOM05D001965 ORTHO05D002112 2.1e-06 55.8 112 37.5
Sed0008965 Sechium edule HOM05D001965 ORTHO05D002112 2.1e-06 55.8 49 51.0
AT3G05380 Arabidopsis thaliana HOM05D001965 ORTHO05D002112 2.8e-06 55.5 117 38.5
A05p42260 Brassica napus HOM05D001965 ORTHO05D002112 2.8e-06 55.5 117 36.8
BraA05t23027Z Brassica rapa HOM05D001965 ORTHO05D002112 2.8e-06 55.5 117 36.8
CAN.G580.4 Capsicum annuum HOM05D001965 ORTHO05D002112 2.8e-06 55.5 115 35.7
Cc01_g01650 Coffea canephora HOM05D001965 ORTHO05D002112 2.8e-06 55.5 114 36.0
Thhalv10019971m.g Eutrema salsugineum HOM05D001965 ORTHO05D002112 2.8e-06 55.5 117 38.5
Manes.15G014400 Manihot esculenta HOM05D001965 ORTHO05D002112 2.8e-06 55.5 114 35.1
Oeu029259.3 Olea europaea HOM05D001965 ORTHO05D002112 2.8e-06 55.5 55 52.7
SalBow2G2791 Salvia bowleyana HOM05D001965 ORTHO05D002112 2.8e-06 55.5 56 53.6
THA.LOC104802553 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 2.8e-06 55.5 116 36.2
Carub.0003s0466 Capsella rubella HOM05D001965 ORTHO05D002112 3.7e-06 55.1 117 39.3
HanXRQChr12g0382241 Helianthus annuus HOM05D001965 ORTHO05D002112 3.7e-06 55.1 47 55.3
Lj4g0021619 Lotus japonicus HOM05D001965 ORTHO05D002112 3.7e-06 55.1 52 51.9
Actinidia40249 Actinidia chinensis HOM05D001965 ORTHO05D002112 4.8e-06 54.7 46 60.9
BcaC05g30151 Brassica carinata HOM05D001965 ORTHO05D002112 4.8e-06 54.7 117 36.8
Potri.010G023201 Populus trichocarpa HOM05D001965 ORTHO05D002112 4.8e-06 54.7 115 36.5
Hund07078 Selenicereus undatus HOM05D001965 ORTHO05D002112 4.8e-06 54.7 112 34.8
vmacro08123 Vaccinium macrocarpon HOM05D001965 ORTHO05D002112 4.8e-06 54.7 46 58.7
Zm00001eb431440 Zea mays HOM05D001965 ORTHO05D002112 4.8e-06 54.7 52 50.0
CsaV3_2G006500 Cucumis sativus L. HOM05D001965 ORTHO05D002112 6.2e-06 54.3 85 41.2
MD12G1217500 Malus domestica HOM05D001965 ORTHO05D002112 6.2e-06 54.3 52 51.9
Sp3g19450 Schrenkiella parvula HOM05D001965 ORTHO05D002112 6.2e-06 54.3 116 37.1
SGA_v2.0_scaffold86G26906 Striga asiatica HOM05D001965 ORTHO05D002112 6.2e-06 54.3 122 34.4
Atru.chr4.2797 Acer truncatum HOM05D001965 ORTHO05D002112 8.2e-06 53.9 116 37.1
AT3G21430 Arabidopsis thaliana HOM05D001965 ORTHO05D002112 8.2e-06 53.9 52 53.8
MSTRG.21805 Avicennia marina HOM05D001965 ORTHO05D002112 8.2e-06 53.9 55 50.9
C05p61840 Brassica napus HOM05D001965 ORTHO05D002112 8.2e-06 53.9 117 35.9
BolC5t34844H Brassica oleracea HOM05D001965 ORTHO05D002112 8.2e-06 53.9 117 35.9
HanXRQChr11g0339601 Helianthus annuus HOM05D001965 ORTHO05D002112 8.2e-06 53.9 112 36.6
Sabra08G0154900 Salix brachista HOM05D001965 ORTHO05D002112 8.2e-06 53.9 115 37.4


User provided reference genes

Program Settings