Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 4.7e-55 217.6 109 100.0
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 8.5e-33 143.7 75 93.3
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 3.2e-32 141.7 88 80.7
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.6e-31 139.4 104 68.3
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 4.0e-30 134.8 75 86.7
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 1.2e-29 133.3 75 82.7
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.1e-27 126.7 96 64.6
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 7.0e-27 124.0 88 68.2
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 7.0e-27 124.0 76 76.3
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 9.1e-27 123.6 78 80.8
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 9.1e-27 123.6 78 80.8
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 4.5e-26 121.3 78 78.2
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 4.5e-26 121.3 78 75.6
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.0e-25 120.2 78 78.2
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.3e-25 119.8 78 76.9
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 1.5e-24 116.3 106 60.4
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.5e-24 116.3 78 74.4
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.5e-24 115.5 82 65.9
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.2e-24 114.8 76 73.7
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 4.2e-24 114.8 76 73.7
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 5.5e-24 114.4 78 73.1
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.5e-24 114.4 79 70.9
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 5.5e-24 114.4 79 70.9
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 7.2e-24 114.0 79 72.2
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 9.5e-24 113.6 79 72.2
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 9.5e-24 113.6 78 74.4
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.2e-23 113.2 79 72.2
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.2e-23 113.2 78 73.1
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.6e-23 112.8 77 71.4
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 2.1e-23 112.5 78 69.2
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 2.1e-23 112.5 78 73.1
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 2.8e-23 112.1 78 71.8
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 2.8e-23 112.1 79 73.4
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 3.6e-23 111.7 78 71.8
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 4.7e-23 111.3 77 75.3
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 4.7e-23 111.3 77 75.3
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 4.7e-23 111.3 78 70.5
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 6.1e-23 110.9 72 77.8
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 6.1e-23 110.9 79 70.9
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 8.0e-23 110.5 78 71.8
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.0e-22 110.2 95 60.0
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.0e-22 110.2 77 74.0
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.3e-22 109.0 77 75.3
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.3e-22 109.0 77 74.0
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 3.0e-22 108.6 78 67.9
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 4.0e-22 108.2 78 70.5
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 4.0e-22 108.2 78 67.9
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 5.2e-22 107.8 78 65.4
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 6.8e-22 107.5 78 66.7
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 6.8e-22 107.5 78 65.4
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.5e-21 106.3 78 65.4
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.5e-21 106.3 77 67.5
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.5e-21 106.3 77 70.1
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 2.0e-21 105.9 77 67.5
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 2.6e-21 105.5 102 56.9
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.6e-21 105.5 77 71.4
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.4e-21 105.1 78 64.1
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 3.4e-21 105.1 79 67.1
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 4.4e-21 104.8 78 64.1
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 4.4e-21 104.8 78 65.4
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 5.7e-21 104.4 78 66.7
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.8e-21 103.6 78 62.8
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.3e-20 103.2 77 64.9
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.3e-20 103.2 78 64.1
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 1.3e-20 103.2 79 67.1
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.7e-20 102.8 78 65.4
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.7e-20 102.8 77 64.9
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.2e-20 102.4 72 69.4
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 2.8e-20 102.1 77 67.5
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 4.9e-20 101.3 78 65.4
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 6.3e-20 100.9 75 69.3
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 8.3e-20 100.5 78 64.1
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 8.3e-20 100.5 78 65.4
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.1e-19 100.1 105 57.1
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.4e-19 99.8 110 47.3
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.8e-19 99.4 78 65.4
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 2.4e-19 99.0 92 59.8
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 4.1e-19 98.2 70 67.1
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 4.1e-19 98.2 79 64.6
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 5.4e-19 97.8 74 64.9
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 5.4e-19 97.8 78 62.8
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 7.0e-19 97.4 79 63.3
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 7.0e-19 97.4 80 63.8
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 7.0e-19 97.4 79 63.3
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 7.0e-19 97.4 89 58.4
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 7.0e-19 97.4 79 63.3
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 7.0e-19 97.4 78 65.4
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 9.2e-19 97.1 80 62.5
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.2e-18 96.7 74 66.2
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 1.2e-18 96.7 111 51.4
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.2e-18 96.7 72 66.7
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.6e-18 96.3 91 59.3
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 2.0e-18 95.9 77 64.9
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 2.0e-18 95.9 77 64.9
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 2.0e-18 95.9 77 64.9
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 2.0e-18 95.9 77 55.8
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 2.7e-18 95.5 55 76.4
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 3.5e-18 95.1 80 62.5
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 5.9e-18 94.4 78 62.8
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 7.8e-18 94.0 72 61.1
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.3e-17 92.4 86 58.1
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 2.9e-17 92.0 75 60.0
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.9e-17 92.0 79 59.5
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 3.8e-17 91.7 111 50.5
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 8.6e-17 90.5 69 68.1
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.5e-16 89.7 78 60.3
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 3.3e-16 88.6 122 48.4
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 2.8e-15 85.5 54 74.1
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 6.8e-14 80.9 71 59.2
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 8.9e-14 80.5 45 77.8
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 8.9e-14 80.5 76 53.9
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 5.8e-13 77.8 75 49.3
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.7e-12 76.3 75 48.0
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.2e-10 70.1 46 63.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.5e-10 68.6 38 84.2
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 2.1e-07 59.3 63 41.3
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 2.3e-06 55.8 68 38.2


User provided reference genes

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